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PyWFDeconv

Original Git: https://github.com/meravstr/Wide-Field-Deconvolution
Paper: https://www.biorxiv.org/content/10.1101/2020.02.01.930040v1
Translating (and enhancing) code from Matlab into Python..

1. Installation

Put the PyWFDeconv folder into your Python Project.
Use "import PyWFDeconv as wfd" for default usage. This contains function wrappers that execute most of the code.
If you want to get into the individual functions, you'll have to import sub-packages (e.g. as in "import PyWFDeconv.convar").

Notes

If you want to use experimental features, you'll most likely have to downgrade to Python 3.7.
Numba doesn't support newer Python Version atm (Mar 2021).
However, basic PyWFDeconv functionalities work with Python 3.9.

2. Usage

Have a look at the template_main.py.
Be sure to read my thesis included in this repo for more information on speedup measures.

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