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.travis.yml
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.travis.yml
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language: c
services:
- docker
before_install:
- wget https://github.com/icbi-lab/quanTIseq/releases/download/v2.0.0/hg19_M_rCRS_kallisto.idx -O quantiseq/kallisto/hg19_M_rCRS_kallisto.idx
- docker build -t icbi/quantiseq2:latest .
script:
- FORCE_DOCKER=1 ./quanTIseq_pipeline.sh --outputdir=/tmp --inputfile=test/rnaSeqInfoFile_singlesample.txt --prefix=ss
- diff test/Output_testfiles/ss_cell_fractions.txt /tmp/ss_cell_fractions.txt
- diff test/Output_testfiles/ss_gene_tpm.txt /tmp/ss_gene_tpm.txt
- FORCE_DOCKER=1 ./quanTIseq_pipeline.sh --outputdir=/tmp --inputfile=test/rnaSeqInfoFile.txt
- diff test/Output_testfiles/quanTIseq_cell_fractions.txt /tmp/quanTIseq_cell_fractions.txt
- diff test/Output_testfiles/quanTIseq_gene_tpm.txt /tmp/quanTIseq_gene_tpm.txt
deploy:
provider: script
script: bash .travis/docker_push.sh
on:
branch: master