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@icbi-lab

ICBI

Institute of Bioinformatics @ Medical University of Innsbruck

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  1. nextNEOpi nextNEOpi Public

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    Nextflow 65 23

  2. NeoFuse NeoFuse Public

    NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

    Shell 17 9

  3. Immunophenogram Immunophenogram Public

    R 40 26

  4. quanTIseq quanTIseq Public

    a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data

    R 18 10

  5. infercnvpy infercnvpy Public

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    Python 123 27

  6. miopy miopy Public

    HTML 1 1

Repositories

Showing 10 of 38 repositories
  • atlas_protocol Public

    A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).

    icbi-lab/atlas_protocol’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 6 5 2 Updated Jul 8, 2024
  • infercnvpy Public

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    icbi-lab/infercnvpy’s past year of commit activity
    Python 123 BSD-3-Clause 27 11 3 Updated Jul 8, 2024
  • hairy_cell_leukemia Public

    Single-cell analysis of Hairy Cell Leukemia samples published in Bohn et al.

    icbi-lab/hairy_cell_leukemia’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jul 4, 2024
  • DoseRider Public

    DoseRider: Generalized Additive Mixed Models (GAMMs) for Analyzing Dose-Response Relationships in Gene Expression Data

    icbi-lab/DoseRider’s past year of commit activity
    R 2 MIT 0 0 0 Updated Jun 14, 2024
  • nextNEOpi Public

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    icbi-lab/nextNEOpi’s past year of commit activity
    Nextflow 65 23 4 0 Updated May 21, 2024
  • loncova_mcb_2024 Public

    Code to for the MCB chapter in "Immuno-oncology and immunotherapy" (Loncova et al. 2024)

    icbi-lab/loncova_mcb_2024’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 25, 2024
  • plattner_mcb_2024 Public

    Code for the MCB chapter in "Immuno-oncology and immunotherapy" (Plattner et al. 2024)

    icbi-lab/plattner_mcb_2024’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 22, 2024
  • OvRSeq Public

    OvRSeq is an R package for analyzing RNA sequencing data from ovarian cancer patients.

    icbi-lab/OvRSeq’s past year of commit activity
    R 1 1 0 0 Updated Feb 20, 2024
  • hgsoc Public

    Code Repository for 'Integrated immunogenomic analyses of high-grade serous ovarian cancer reveal vulnerability to combination immunotherapy'

    icbi-lab/hgsoc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 27, 2023
  • plattner_2023 Public

    Code to reproduce figures from Plattner et al. (2022)

    icbi-lab/plattner_2023’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Nov 17, 2023
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