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Dockerfile
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FROM centos:7
LABEL maintainer="christina.plattner@i-med.ac.at,francesca.finotello@i-med.ac.at,dietmar.rieder@i-med.ac.at"
RUN yum clean all && yum -y update
################# BEGIN INSTALLATION ######################
################## Java
RUN yum install -y java
################## R (> version 3.4.3)
RUN yum install -y epel-release
RUN yum install -y R-core R-devel
#### utils
RUN yum install -y dos2unix
RUN yum install -y mc
ADD dependencies.R /tmp/
RUN Rscript /tmp/dependencies.R
################## main
ADD quantiseq /opt/quantiseq
##################### INSTALLATION END #####################
#Clean up
RUN rm -rf /tmp/* /var/tmp/* ~/.cache/*
# entrypoint
ENTRYPOINT ["/opt/quantiseq/quanTIseq.sh"]