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Release 0.4.1 #543

Merged
merged 118 commits into from
Sep 11, 2024
Merged

Release 0.4.1 #543

merged 118 commits into from
Sep 11, 2024

Commits on Aug 26, 2024

  1. Made shell of a migration plan.

    @MicahGale
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  2. Added deprecation not to material_component.

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Commits on Aug 28, 2024

  1. Add profiling and benckmarking (#513) 

    * Started profiling test suite.

* Tests now need to be able to build package.

* Filtered less for montepy

* Made a big annoying model to stress MontePy for profiling and benchmarking.

* Enabled big model CI work.

* Fixed bad path.

* Fixed benchmark and gave failure condition.

* Increased failure threshold to 4 minutes.

* Learned how to actually get the results from a profile.

* GHA is slow: increased threshold.

* Updated benchmark to not be near line lenght max.
    @MicahGale
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  2. Squashed profile commits that mat_optimize had

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  3. Made mechanism for data inputs to flag self for deletion.

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  4. Moved material linking to thermal_scattering with hashing.

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  5. Changed how thermal scattering linking occurs in test.

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  6. Seriously lowered the benchmark threshold

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  7. Added #510 to changelog.

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  8. Switched order of filters to make sense.

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  9. Merge pull request #518 from idaholab/mat_optimize 

    Optimize Material Update Pointers
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  10. Implemented reading input from a stream.

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  11. Test read/write all input files.

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  12. Made verification tests harder.

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  13. Replicated #499 by forcing a recompression.

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  14. Dumped whole file to stdout.

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  15. Expand tabs and update test to new inputs.

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  16. tried to use interpolation for test.

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  17. Actually replicated #499 with multiple shortcuts in a line.

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  18. Updated test again with new importance gold.

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  19. Fixed logic to detect when you can smash repeats together.

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  20. Updated logic to test for matching value with valueNode.

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  21. Undid debugging.

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  22. Updated logic to always check for edge node matching.

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Commits on Aug 29, 2024

  1. Updated tests to cover more edge cases.

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  2. Made logic clearer and more pythonic.

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  3. Removed implicit importance to avoid parrot out bug.

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  4. Fixed bug in validate for cylinder_on_axis.

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  5. Made it possible to have integer interpolations.

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  6. Started framework for geometry tree recompressing interpolations.

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  7. Switched to preserving shortcut type for geometry stuff.

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  8. Exposed shortcut type.

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  9. Made system to make a shortcutNode from scratch kind of.

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  10. Formatted shortcuts inside of GeometryTree

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  11. Updated tests to avoid complex reads and implicit importances.

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  12. Fixed interal link to migration.

    @MicahGale
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  13. Wrote up a description of the deprecations.

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  14. Deprecated material_components.

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  15. Avoided triggering deprecation warnings internally.

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  16. Added tests to test for deprecation.

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  17. Merge branch 'develop' into mat_deprecate

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  18. Added helpful description.

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  19. Added #506 to changelog.

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Commits on Aug 30, 2024

  1. Replicated #352.

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  2. Fixed test to expect three leading comments.

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  3. Made system to ignore default parameters for trailing comments.

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  4. Avoid cross-block trailing comment transfer.

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  5. Updated delete trailing comment to match new get_trailing_comment.

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  6. Skip empty nodes in the tail.

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Commits on Aug 31, 2024

  1. Updated test to be more thurough)

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  2. Updated ClassifierNode handling of padding for trailing and str.

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  3. Updated get trailing comment logic to handle valueNodes in tree.

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  4. Updated complex logic for deleteing trailing comments.

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  5. Updated geometry expansion tests to be more exhaustive.

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  6. Fixed test to be looser.

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  7. fixed bugs in M in geometry.

    @MicahGale
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  8. Added more edge cases.

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  9. Started debugging.

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Commits on Sep 2, 2024

  1. Made system for tracking left and right shortuts

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  2. Updated shortcut finding logic to find shortcuts in the middle.

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  3. Close enough with padding.

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  4. Updated changelog with #520 PR.

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  5. Avoided marking shortcuts overriding old shortcut.

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  6. Fixed over-appending leaves to the new list.

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  7. Created migrations folder.

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  8. Marked Isotope class as deprecated.

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  9. Added deprecation warnings for inits.

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  10. Updated mat tests to handle deprecation warnings.

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Commits on Sep 3, 2024

  1. Added tests for mark_last_leaf_shortcut.

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  2. Started testing for flatten_shortcut.

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  3. Finished test for flatten_shortcuts.

    @MicahGale
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  4. Fixed test typos.

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  5. Fixed tests because I can't count at all.

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  6. Fixed bug with excess depth in call.

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  7. Cleaned up with @tjlaboss feedback.

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  8. Added test replicate new edge case from @tjlaboss.

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  9. Added more exhaustive shortcut tests.

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  10. Expanded using last node on formatting to all shortcuts, and handled … 

    …interpolate messiness.
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  11. Fixed test to be all caps.

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  12. Updated logic for multiply shortcuts using neigbors.

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  13. Created system to track starting value for interpolate in geometry tr… 

    …ees.
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  14. Added doc strings for new functions.

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Commits on Sep 4, 2024

  1. Fixed typo

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Commits on Sep 9, 2024

  1. Replicated issue #521.

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  2. Fixed material parser to be able to parse plib=84p.

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  3. Added #521 to changelog.

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Commits on Sep 10, 2024

  1. Made tests stricter to only insert once.

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  2. Replicated error #516.

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  3. Changed order of appending to allow failure first.

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  4. Updated changelog with #516.

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  5. Merge pull request #538 from idaholab/516-materialsappend_renumber-ad… 

    …ds-double-materials

Fixed bug double adding materials.
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  6. Merge branch 'develop' into 521-problem-formatting-material-with-plib… 

    …-for-mcnp-input
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  7. Merge branch 'develop' into mat_deprecate

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  8. Merge branch 'develop' into 499-shortcuts-recompressed-incorrectly

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  9. Added a cute ascii snek (v important)

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  10. Merge pull request #528 from idaholab/mat_deprecate 

    Marked material_components for deprecation.
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  11. Merge branch 'develop' into 499-shortcuts-recompressed-incorrectly

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  12. Merge branch 'develop' into snek.txt

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  13. Triggered edge case from #526 #520

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  14. Update gold value with new line.

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  15. Tried to move the trailing comments around the special tree for now.

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  16. Merge pull request #541 from idaholab/snek.txt 

    ASCII Snek
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  17. Merge branch 'develop' into 521-problem-formatting-material-with-plib… 

    …-for-mcnp-input
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  18. Merge branch 'develop' into 499-shortcuts-recompressed-incorrectly

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  19. Updated test with new input model.

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  20. Fixed potential repr bug.

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  21. Tried to figure out where this stupid valuenode comment is coming from.

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  22. Made test more robust.

    @MicahGale
    MicahGale committed Sep 10, 2024
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  23. Found where the syntax node actually lives; needs work.

    @MicahGale
    MicahGale committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. Added tests for all lib identifiers.

    @MicahGale
    MicahGale committed Sep 11, 2024
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  2. Removed forsed failure.

    @MicahGale
    MicahGale committed Sep 11, 2024
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  3. Setup system to track which particles were paired up.

    @MicahGale
    MicahGale committed Sep 11, 2024
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  4. Updated to use actual trees, and ensured all affected trees cleared.

    @MicahGale
    MicahGale committed Sep 11, 2024
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  5. Merge pull request #537 from idaholab/521-problem-formatting-material… 

    …-with-plib-for-mcnp-input

Fixed bug with plib in Material
    @MicahGale
    MicahGale committed Sep 11, 2024
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  6. Merge branch 'develop' into 499-shortcuts-recompressed-incorrectly

    @MicahGale
    MicahGale committed Sep 11, 2024
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  7. Fixed bug where the parameters weren't actually loaded into syntax tree.

    @MicahGale
    MicahGale committed Sep 11, 2024
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  8. Merge pull request #520 from idaholab/499-shortcuts-recompressed-inco… 

    …rrectly

Fix issue with shortcut recompression
    @MicahGale
    MicahGale committed Sep 11, 2024
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  9. Updating changelog to next version: 0.4.1

    @MicahGale
    MicahGale committed Sep 11, 2024
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