KymoRod 0.12.2

KymoRod version 0.12.2

This version removes code warnings, and add missing file required in previous version.

KymoRod v0.12.1

KymoRod v0.12.1

This release adds support for 16-bits image series.

KymoRod v0.12.0

New Release of the KymoRod software.

KymoRod is a Graphical Application for Matlab that allows to compute kymographs, depictings the growth of various plant organ (plantlets, roots...).

New features:

• It is now possible to compute kymographs of intensity in the original image, or in another collection of images.
• It is now possible to choose the colormap of the resulting kymograph
• some inner classes have been renamed for better understanding
• skeleton is now computed in pixel coordinates, avoiding unnecessary conversions
• add an option to display the whole collection of skeletons in a 3D display
• added function snapCurveToPixels to simplify computation of displacements
• added function kymographFromValues to replace reconstruct_Elg2.m

KymoRod v0.11.1

New release of the KymoRod software.

New features:

• it is now possible to export the skeletons as ImageJ ROIs, or as text files
• It is now possible to specify the options for bilaterate filtering of the displacement curves
• added a welcome figure in starting dialog
• fixed bug in DisplayKymograph.m
• fixed bug when canceling "load previous analysis" dialog

KymoRod v0.11.0

Fix several bugs in user interface

• fix several bugs in computation of displacement, that could cause missing points in displacement vector
• fix bug in saving elongation files
• fix bug when creating new analysis from main menu
• the KymoRod application now better supports parallelization
• it is possible to specify a different channel for computing displacement
• update display of Kymographs

KymoRod v0.10.1

Bug fix release, with following improvements:

• add possibility to choose a different file folder when opening a saved analysis
• fix bug in manual threshold selection
• fix loading images without lazy loading
• refactor SelectThresholdDialog
• update display of coloured skeleton when changing frame index
• allows larger contour smoothing windows
• add option to display current settings (in menu Edit->Display Settings)
• enhance computeDisplacement (put check bounds test outside of main loop)

KymoRod 0.10.0

KymoRod 0.10.0 is a software for the analysis of growth of plant organs (roots, hypocotyls...).

New features in KymoRod 0.10.0:

• add the possibility to perform image smoothing before computing threshold
• add a new "New Analysis" menu entry
• better display of threshold information
• better management of errors
• fix several bugs

KymoRod 0.9.3

This is mainly a stabilisation releases, that fixes few GUI bugs, and should bring more stabiliy.

KymoRod 0.9

KymoRod software version 0.9.

New features for version 0.9:

• Application now start with a dialog allowing to load an previous analysis
• added the possibility to run the whole workflow without validating each step
• use an alternative algorithm for computing displacement
• added a log file, that can be displayed from the main menu
• added standard menus to all dialogs, and an "About" Dialog.
• enhance save/load of analyses
• added support for load/save from menus
• enhance management of older versions
• fixed bug in management of image names,
• fixed bug in modification of manual threshold
• fixed bug in management of color images
• fixed several bugs in dialog for selection of images

KymoRod 0.8

KymoRod software version 0.8.

New features for version 0.8:

• add possibility to save and load analyses
• add possibility to read settings from previous analysis
• add new startup dialog
• add possibility to run the whole workflow if settings are valid
• some data are not re-computed if they area already available (threshold, contour...)
• calibration information are saved with kymograph images
• most processing is now managed by the 'KymoRod' class
• better support of processing steps via specific class
• better support of settings, that can be used for another analysis
• add support for lazy loading of input images