Switch SearchResult display to model/view paradigm #1324
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# This workflows will upload a Python Package using Twine when a release is created | |
# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
name: tests | |
on: | |
push: | |
branches: | |
- main | |
tags: | |
- "*-[0-9]+.*" | |
pull_request: | |
branches: | |
- main | |
env: | |
NAPARI_IMAGEJ_TEST_TIMEOUT: 60000 | |
jobs: | |
test-pip: | |
name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.platform }} | |
strategy: | |
matrix: | |
platform: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ['3.8', '3.11.0'] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Set up Java 8 | |
uses: actions/setup-java@v3 | |
with: | |
java-version: '8' | |
distribution: 'zulu' | |
- name: Setup Qt libraries | |
uses: tlambert03/setup-qt-libs@v1 | |
# strategy borrowed from vispy for installing opengl libs on windows | |
- name: Install Windows OpenGL | |
if: runner.os == 'Windows' | |
run: | | |
git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
# We run headless on CI. This yields issues on Mac, where running Java | |
# headless will alter the screen size on Python, leading to errors. Adding | |
# this environment variable prevents Java from modifying the screen size. | |
- name: Set MacOS environment variables | |
if: runner.os == 'MacOS' | |
run: | | |
echo "AWT_FORCE_HEADFUL=true" >> $GITHUB_ENV | |
- name: Install napari-imagej | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -e '.[dev]' | |
- name: Test napari-imagej | |
uses: coactions/setup-xvfb@v1 | |
with: | |
run: | |
bash bin/test.sh | |
ensure-clean-code: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-python@v3 | |
with: | |
python-version: 3.9 | |
# This step ensures that everything is installed | |
- name: Install code cleaning components | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -e '.[dev]' | |
- name: Lint code | |
uses: psf/black@stable | |
- name: Flake code | |
run: | | |
python -m flake8 src tests | |
- name: Check import ordering | |
uses: isort/isort-action@master | |
with: | |
configuration: --check-only | |
- name: Validate pyproject.toml | |
run: | | |
python -m validate_pyproject pyproject.toml | |
conda-dev-test: | |
name: Conda Setup & Code Coverage | |
runs-on: ubuntu-latest | |
defaults: | |
# Steps that rely on the activated environment must be run with this shell setup. | |
# See https://github.com/marketplace/actions/setup-miniconda#important | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Cache conda | |
uses: actions/cache@v2 | |
env: | |
# Increase this value to reset cache if dev-environment.yml has not changed | |
CACHE_NUMBER: 0 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
hashFiles('dev-environment.yml') }} | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
# Create env with dev packages | |
auto-update-conda: true | |
python-version: "3.10" | |
miniforge-variant: Mambaforge | |
environment-file: dev-environment.yml | |
# Activate napari-imagej-dev environment | |
activate-environment: napari-imagej-dev | |
auto-activate-base: false | |
# Use mamba for faster setup | |
use-mamba: true | |
- name: Setup Qt libraries | |
uses: tlambert03/setup-qt-libs@v1 | |
- name: Test napari-imagej | |
uses: GabrielBB/xvfb-action@v1 | |
with: | |
run: | | |
conda run -n napari-imagej-dev --no-capture-output python -m pytest -s -p no:faulthandler --color=yes --cov-report=xml --cov=. | |
# We could do this in its own action, but we'd have to setup the environment again. | |
- name: Upload Coverage to Codecov | |
uses: codecov/codecov-action@v2 |