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Opencpu client dev #271

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Opencpu client dev #271

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Commits on Dec 9, 2022

  1. translate list_animal_ids to use API

    @PietrH
    PietrH committed Dec 9, 2022
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Commits on Dec 12, 2022

  1. Add helper function to get ETN database credentials from Sys.env

    @PietrH
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  2. add httr dependency for API calls

    @PietrH
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  3. comment out unused code, warn for status, add roxygen skeleton

    @PietrH
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  4. add helper for fetching temp key from api response

    @PietrH
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  5. add list_animal_ids_api to namespace

    @PietrH
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  6. generate help files

    @PietrH
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  7. move helper to utils.R, generate documentation

    @PietrH
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  8. cleanup unused code

    @PietrH
    PietrH committed Dec 12, 2022
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  9. stylr, lintr

    @PietrH
    PietrH committed Dec 12, 2022
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  10. Delete get_val.Rd

    @PietrH
    PietrH committed Dec 12, 2022
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  11. stop inheriting documentation 

    The original -local- functions are likely to be removed at some point, so inheriting documentation from them seems unwise
    @PietrH
    PietrH committed Dec 12, 2022
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  12. add test

    pieter.huybrechts@inbo.be committed Dec 12, 2022
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  13. Merge branch 'opencpu-client' of https://github.com/inbo/etn into ope… 

    …ncpu-client
    pieter.huybrechts@inbo.be committed Dec 12, 2022
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  14. add test for list_animals_ids_api()

    @PietrH
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  15. Merge branch 'opencpu-client' of https://github.com/inbo/etn into ope… 

    …ncpu-client
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Commits on Jan 4, 2023

  1. remove empty lines between @params

    @PietrH
    PietrH committed Jan 4, 2023
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  2. switch stringr to glue

    @PietrH
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  3. switch glue for paste

    @PietrH
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  4. fix typo

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  5. don't use two statics, but only one 

    See https://github.com/inbo/etn/pull/271/files/e24e20d7998e5d17a996bf63fbfb79b7551b155e#r1061471137
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  6. check response header for content-type

    @PietrH
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  7. stylistic fix: function definition should start on same line as it's … 

    …name
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  8. create helper to check for response content type

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  9. use glue instead of stringr::str_glue

    @PietrH
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  10. clarify documentation

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  11. use glue instead of stringr::str_glue

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Commits on Feb 10, 2023

  1. update to new endpoint, rename authentification argument etnservice#9

    @PietrH
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  2. get started on a general function port pattern

    @PietrH
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  3. pass credentials as object, not as string

    @PietrH
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  4. forward R errors

    @PietrH
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  5. helper to transform R objects into JSON primitives 

    unused
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  6. helper to fetch parent function arguments

    @PietrH
    PietrH committed Feb 10, 2023
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Commits on Jun 7, 2023

  1. add lifecycle to imports

    @PietrH
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  2. demote get_acoustic_detections_api() to helper: see #280

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  3. use two step api object fetching

    @PietrH
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  4. add roxygen skeleton for api helper

    @PietrH
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  5. don't pass api or connection arguments to helpers

    @PietrH
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  6. pass function itself, not an empty execution

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  7. don't overwrite function arguments

    @PietrH
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  8. two step endpoint needs to end on slash

    @PietrH
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  9. use sys.calls() instead of match.call() because of higher nesting

    @PietrH
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  10. use more intelligent parent function finding

    @PietrH
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  11. increase resiliance: support multiline calls, support out of order ar… 

    …guments
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  12. add purrr import

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  13. add retry on first request, add http failure states

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  14. convert all tests to use API, add limit, add test for passing errors … 

    …over api
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Commits on Jun 8, 2023

  1. prompt user for missing credentials

    @PietrH
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  2. add dev dep: withr + up testthat to 3e

    @PietrH
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  3. up testthat to 3e

    @PietrH
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  4. test if get_credentials() can fetch values from sys env

    @PietrH
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  5. Merge branch 'main' into opencpu-client-dev

    @PietrH
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  6. remove default NULL connection (default should me missing) + remove c… 

    …ommented out code
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  7. remove unused helpers

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  8. Clean up comments

    @PietrH
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  9. add rlang dependency

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  10. add helpers for checking OpenCPU response objects and deprecation of … 

    …connection argument
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  11. rewrite list_animal_ids() to use api

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  12. remove old list_animal_ids_api() function, now helper in list_animal_… 

    …ids()
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  13. add tests for list_animal_ids()

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  14. add comments, use deprecation helper

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  15. remove list_animal_ids_api()

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  16. helper to get the name of the parent function

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  17. devtools::document()

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  18. use helper to get function identity

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  19. general helper to forward function arguments to api, including functi… 

    …on identity
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  20. use generic helper to handle api call, remove specific helpers

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  21. add tests for sql query

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  22. expect_is should be expect_type in testthat 3e

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  23. rewrite list_acoustic_project_codes() to use api

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  24. rewrite list_acoustic_project_codes() to use api

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  25. resolve merge conflict 

    Merge branch 'opencpu-client-dev' of github.com:inbo/etn into opencpu-client-dev

# Conflicts:
#	R/list_acoustic_project_codes.R
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  26. rewrite list_acoustic_tag_ids() to use api

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  27. assert that api argument is a flag

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  28. rewrite list_animal_project_codes() and list_cereiver_ids() to use api

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  29. adapt list_scientific_names() and list_station_names() to use api

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Commits on Jun 13, 2023

  1. create helper to switch between using api or not, adapt helpers to re… 

    …lative depth of caller env
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  2. adapt api functions to use conductor helper

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  3. devtools::document()

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  4. allow deprecate_warn_connection() to fetch function_identity itself

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  5. remove unused argument from deprecate_warn_connection()

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  6. remove reference to deprecated connection argument

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Commits on Jun 15, 2023

  1. add tests for API helpers

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  2. set get_val() to retry, style fixes, add domain options to helpers fo… 

    …r tests
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  3. rewrite get_acoustic_deployments() to use api

    @PietrH
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  4. update test to use api over sql

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  5. set sql helper to not use api

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  6. add test that uses sql rather than api

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  7. devtools::document()

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  8. adapt list_cpod_project_codes() to use api

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  9. adapt get_acoustic_projects() to use api

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  10. adapt get_acoustic_receivers() to use api

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  11. adapt get_animal_projects() to use api

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  12. adapt list_tag_serial_numbers() to use api

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  13. adapt get_animals() to use the api

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  14. adapt list_deployment_ids() to use api

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  15. adapt get_cpod_projects() to use api

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  16. hard deprecate connect_to_etn(), use lifecycle for badges. Add to i… 

    …mports.
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  17. adapt get_tags() to use the api

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Commits on Jun 16, 2023

  1. fix old calls to refer to api adapted arguments

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  2. fix old calls to refer to api adapted arguments

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  3. adapt download_acoustic_dataset() to use api

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  4. rewrite test for download_acoustic_dataset(), use snapshots, split of… 

    …f api/sql
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  5. remove now unused snapshot file

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  6. add snapshots for download_acoustic_dataset()

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  7. devtools::document()

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  8. set helper arguments to use api

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  9. adapt snapshots with new test titles

    @PietrH
    PietrH committed Jun 16, 2023
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  10. update helper arguments to api rewrite

    @PietrH
    PietrH committed Jun 16, 2023
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  11. reduce test strictness, cope with running interactivly

    @PietrH
    PietrH committed Jun 16, 2023
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  12. improve test coverage by writing tests for sql helper

    @PietrH
    PietrH committed Jun 16, 2023
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  13. add missing connection creation to sql helper

    @PietrH
    PietrH committed Jun 16, 2023
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  14. release connection when done

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    PietrH committed Jun 16, 2023
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  15. close connections after using them

    @PietrH
    PietrH committed Jun 16, 2023
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Commits on Jun 19, 2023

  1. plug connection leak

    @PietrH
    PietrH committed Jun 19, 2023
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  2. escape capture group in regex to avoid test failure

    @PietrH
    PietrH committed Jun 19, 2023
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  3. increase number of times to retry api calls

    @PietrH
    PietrH committed Jun 19, 2023
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  4. update snapshot to full error message

    @PietrH
    PietrH committed Jun 19, 2023
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  5. bump version to v3 dev

    @PietrH
    PietrH committed Jun 19, 2023
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  6. Remove deprecated functions from v2.1.0 from ETN

    @PietrH
    PietrH committed Jun 19, 2023
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  7. add NEWS.md

    @PietrH
    PietrH committed Jun 19, 2023
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  8. no longer split off api and sql tests

    @PietrH
    PietrH committed Jun 19, 2023
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  9. plug another connection leak

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    PietrH committed Jun 19, 2023
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  10. adapt get_val() to close connection

    @PietrH
    PietrH committed Jun 19, 2023
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Commits on Jun 20, 2023

  1. expect_is should be expect_type in testthat 3e

    @PietrH
    PietrH committed Jun 20, 2023
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  2. limit query in time, don't use limit, so result is identical every time

    @PietrH
    PietrH committed Jun 20, 2023
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  3. limit query in time, don't use limit, so result is identical every time

    @PietrH
    PietrH committed Jun 20, 2023
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  4. Merge branch 'opencpu-client-dev' of github.com:inbo/etn into opencpu… 

    …-client-dev
    @PietrH
    PietrH committed Jun 20, 2023
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  5. disable test awaiting #283

    @PietrH
    PietrH committed Jun 20, 2023
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