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updated lmem test case
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amit-samal committed Oct 4, 2024
1 parent 22b8bc3 commit 624b79d
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1 change: 0 additions & 1 deletion scalr/analysis/dge_lmem.py
Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,6 @@ def get_genes_n_fixed_val_subset_df(self,
ad_subset_to_df[self.group] = ad_subset.obs[self.group].values
ad_subset_to_df[self.fixed_effect_column] = ad_subset.obs[
self.fixed_effect_column].values
# del ad_subset
else:
sc.pp.filter_genes(batch_adata, min_cells=self.min_cell_threshold)
ad_subset_to_df = batch_adata.to_df()
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