InstaNovo 1.0.0 code tests #96
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Test on multiple Python versions and on multiple operating systems | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] # "3.12" | |
| os: [ubuntu-latest, windows-latest] # macos-latest | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" # caching pip dependencies | |
| cache-dependency-path: "**/requirements*.txt" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade uv | |
| uv pip install --system -r requirements/requirements.txt | |
| uv pip install --system -r requirements/requirements-dev.txt | |
| - name: Lint with pre-commit | |
| run: | | |
| pre-commit run --all-files -c .pre-commit-config.yaml | |
| - name: Test with pytest | |
| run: | | |
| python -m instanovo.scripts.get_zenodo_record.py | |
| pytest -v --alluredir=allure_results --cov-report=html --cov --cov-config=.coveragerc --random-order | |
| coverage report -m | |
| - name: Test notebooks on Linux | |
| if: runner.os != 'Windows' && github.ref == 'refs/heads/main' && github.event_name == 'push' | |
| run: | | |
| PYDEVD_DISABLE_FILE_VALIDATION=1 python -m ipykernel install --user --name instanovo | |
| pytest --nbmake "./notebooks" --nbmake-kernel=instanovo --nbmake-timeout=10000 | |
| - name: Test notebooks on Windows | |
| if: runner.os == 'Windows' && github.ref == 'refs/heads/main' && github.event_name == 'push' | |
| run: | | |
| $env:PYDEVD_DISABLE_FILE_VALIDATION=1; python -m ipykernel install --user --name instanovo | |
| pytest --nbmake "./notebooks" --nbmake-kernel=instanovo --nbmake-timeout=10000 |