v0.12.6

Bug fix reading command line option --filter_min_frs

v0.12.5

Version 0.12.5

v0.12.4

Version 0.12.4

v0.12.3

• Fix bug where would crash if whitespace in sequence names in reference fasta file

v0.12.2

New release to trigger Docker build

v0.12.1

New release so singularity build is added to release page

Version 0.12.0

Changes:

• improvements to default filters in final output VCF file.
• use pinned gramtools commit 8af53f6c8c0d72ef95223e89ab82119b717044f2

Version 0.11.0

• new joint genotyping Nextflow pipeline added
• fixes to the genotyping model
• input variants are split and normalised using vt and vcflib. This means final output VCF file has generally fewer complex variants, instead they are split into their separate SNPs and indels

Version 0.10.0

• Genotype model changed to homozygous only by default
• Default filters in final VCF changed as a result of genotyping changing
• Consecutive (non-overlapping) variants are not put together in the graph, simplifying the graph and reducing the change of combinatorial explosions

Version 0.9.0

Bloody release just because i did not version bump the last one.