Gastric Cancer Multi-omics 2022

Introduction

This repository is a part of the supplementary document in Park et al., "Multi-omics Reveals Microbiome, Host Gene Expression, and Immune Landscape in Gastric Carcinogenesis" published in iScience 2022.

Setup

After cloning this github url into your local, run install_req_R_modules.R to install R libraries necessary to run the main script successfully.

Rscript ./install_req_R_modules.R

Reproducible pipeline

Rscript ./code_2022-02-07.R

Reference

"Multi-omics Reveals Microbiome, Host Gene Expression, and Immune Landscape in Gastric Carcinogenesis", Chan Hyuk Park, Changjin Hong, A-reum Lee, Jaeyun Sung, and Tae Hyun Hwang, iScience 2022