license and 1st draft of pypi ci/cd

.github/workflows/upload-to-pypi.yml

@@ -0,0 +1,117 @@
+name: Publish Python 🐍 distribution 📦 to PyPI and TestPyPI
+
+on: push
+
+jobs:
+ build:
+ name: Build distribution 📦
+ runs-on: ubuntu-latest
+
+ steps:
+ - uses: actions/checkout@v4
+ - name: Set up Python
+ uses: actions/setup-python@v4
+ with:
+ python-version: "3.x"
+ - name: Install pypa/build
+ run: >-
+ python3 -m
+ pip install
+ build
+ --user
+ - name: Build a binary wheel and a source tarball
+ run: python3 -m build
+ - name: Store the distribution packages
+ uses: actions/upload-artifact@v3
+ with:
+ name: python-package-distributions
+ path: dist/
+
+ publish-to-pypi:
+ name: >-
+ Publish Python 🐍 distribution 📦 to PyPI
+ if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes
+ needs:
+ - build
+ runs-on: ubuntu-latest
+ environment:
+ name: pypi
+ url: https://pypi.org/p/balm # Replace <package-name> with your PyPI project name
+ permissions:
+ id-token: write # IMPORTANT: mandatory for trusted publishing
+
+ steps:
+ - name: Download all the dists
+ uses: actions/download-artifact@v3
+ with:
+ name: python-package-distributions
+ path: dist/
+ - name: Publish distribution 📦 to PyPI
+ uses: pypa/gh-action-pypi-publish@release/v1
+
+ github-release:
+ name: >-
+ Sign the Python 🐍 distribution 📦 with Sigstore
+ and upload them to GitHub Release
+ needs:
+ - publish-to-pypi
+ runs-on: ubuntu-latest
+
+ permissions:
+ contents: write # IMPORTANT: mandatory for making GitHub Releases
+ id-token: write # IMPORTANT: mandatory for sigstore
+
+ steps:
+ - name: Download all the dists
+ uses: actions/download-artifact@v3
+ with:
+ name: python-package-distributions
+ path: dist/
+ - name: Sign the dists with Sigstore
+ uses: sigstore/gh-action-sigstore-python@v1.2.3
+ with:
+ inputs: >-
+ ./dist/*.tar.gz
+ ./dist/*.whl
+ - name: Create GitHub Release
+ env:
+ GITHUB_TOKEN: ${{ github.token }}
+ run: >-
+ gh release create
+ '${{ github.ref_name }}'
+ --repo '${{ github.repository }}'
+ --notes ""
+ - name: Upload artifact signatures to GitHub Release
+ env:
+ GITHUB_TOKEN: ${{ github.token }}
+ # Upload to GitHub Release using the `gh` CLI.
+ # `dist/` contains the built packages, and the
+ # sigstore-produced signatures and certificates.
+ run: >-
+ gh release upload
+ '${{ github.ref_name }}' dist/**
+ --repo '${{ github.repository }}'
+
+ publish-to-testpypi:
+ name: Publish Python 🐍 distribution 📦 to TestPyPI
+ needs:
+ - build
+ runs-on: ubuntu-latest
+
+ environment:
+ name: testpypi
+ url: https://test.pypi.org/p/balm
+
+ permissions:
+ id-token: write # IMPORTANT: mandatory for trusted publishing
+
+ steps:
+ - name: Download all the dists
+ uses: actions/download-artifact@v3
+ with:
+ name: python-package-distributions
+ path: dist/
+ - name: Publish distribution 📦 to TestPyPI
+ uses: pypa/gh-action-pypi-publish@release/v1
+ with:
+ repository-url: https://test.pypi.org/legacy/

LICENSE

@@ -0,0 +1,19 @@
+Copyright (c) 2024 Van-Giang Trinh, Kyu Hyong Park, Samuel Pastva, Jordan C Rozum
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

pyproject.toml

@@ -1,10 +1,14 @@
 [project]
 name = "balm"
+authors = [{ name = "Jordan Rozum", email = "jrozum@binghamton.edu" }]
+description = "Boolean Attractor Landscape Mapper"
+license = { file = "LISENSE" }
+requires-python = ">=3.11"
 dependencies = [
  'biodivine_aeon ==1.0.0a4',
- 'clingo ==5.6.2',
- 'networkx==2.8.8',
- 'pypint==1.6.2',
+ 'clingo >=5.6.2',
+ 'networkx>=2.8.8',
+ 'pypint>=1.6.2',
 ]
 dynamic = ["version"]