Skip to content

Releases: jcrozum/biobalm

Minor workflow fixes

10 Jul 18:06
e9626e1
Compare
Choose a tag to compare

This release is the same as v0.3.0 except that it uses more up-to-date GitHub actions. Also, this will help to sync the PyPI release, which now properly recognizes the new repository name.

0.3.0

11 Jul 07:21
Compare
Choose a tag to compare

Summary:

  • A new "source block" expansion methods which supersedes SCC expansion, especially in the context of attractor search.
  • Further tuning of the simulation candidate elimination.
  • Minor refinements of some of the utility methods.
  • Repository cleanup (mostly removal of unused test models).

API changes:

  • Added interaction_graph_utils.source_nodes.
  • SuccessionDiagram.component_subdiagrams renamed to SuccessionDiagram.component_subdiagram with a more "modular" behavior. The old method is available as SuccessionDiagram.source_scc_subdiagrams.
  • Added SuccessionDiagram.expand_block, which implements the new expansion method.
  • Added minimum_simulation_budget to the SuccessionDiagram configuration dictionary.

Full Diff: v0.2.0...v0.3.0

0.2.0

23 Apr 16:46
Compare
Choose a tag to compare
  • Optimizing attractor detection method for improved performance (some of the previously available methods are now hidden as private).
  • Added a new SD configuration object to store all the "global configuration constants".

release-setup: Merge pull request #112 from jcrozum/expansion-refactor-and-docs

10 Apr 19:23
66ff9d7
Compare
Choose a tag to compare