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1. bagherilab/ARCADE bagherilab/ARCADE Public

   ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments

   Java 9 1

2. allen-cell-animated/cell-abm-pipeline allen-cell-animated/cell-abm-pipeline Public

   Simulation, analysis, and visualization workflows for cell-scale agent-based models

   Python 2 1

3. bagherilab/arcade_emergent_behavior bagherilab/arcade_emergent_behavior Public archive

   Supporting code for doi:10.3389/fbioe.2020.00249

   HTML 1

4. bagherilab/arcade_vascular_dynamics bagherilab/arcade_vascular_dynamics Public archive

   Supporting code for doi:10.1016/j.cels.2021.05.007

   HTML 1

5. bagherilab/arcade_modeling_choices bagherilab/arcade_modeling_choices Public archive

   Supporting code for doi:10.1371/journal.pcbi.1011917

   HTML 2