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A package to download metadata from SRA/Biosample/Geo and dump into a mongo database.

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jfear/sramongo

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.idea
.idea
 
 
bin
bin
 
 
conda-recipe
conda-recipe
 
 
docs
docs
 
 
schema
schema
 
 
sramongo
sramongo
 
 
tests
tests
 
 
.bumpversion.cfg
.bumpversion.cfg
 
 
.gitignore
.gitignore
 
 
.travis.yml
.travis.yml
 
 
LICENSE
LICENSE
 
 
MANIFEST.in
MANIFEST.in
 
 
README.rst
README.rst
 
 
conda-build-and-upload.sh
conda-build-and-upload.sh
 
 
dev_requirements.txt
dev_requirements.txt
 
 
pypi-build-and-upload.sh
pypi-build-and-upload.sh
 
 
requirements.txt
requirements.txt
 
 
setup.py
setup.py
 
 

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sramongo

sramongo is a python library with a command line tool (sra2mongo) to query and download the SRA and save as a mongo database. Documentation can be found here.

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A package to download metadata from SRA/Biosample/Geo and dump into a mongo database.

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MIT license
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Releases 1

Working with Python 3.6 Latest
Mar 6, 2018

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