Merge pull request #80 from rob-p/alignment-score

Alignment score
jguhlin · Nov 21, 2024 · adc1c1f · adc1c1f
2 parents cc889f7 + 8a68d8c
commit adc1c1f
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Showing 3 changed files with 360 additions and 27 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,11 +1,11 @@
 [package]
-name = "minimap2"
-version = "0.1.20+minimap2.2.28"
+name = "minimap2-temp"
+version = "0.1.32+minimap2.2.28"
 edition = "2021"
 authors = ["Joseph Guhlin <joseph.guhlin@gmail.com>"]
 license = "MIT OR Apache-2.0"
 description = "Bindings to libminimap2"
-repository = "https://github.com/jguhlin/minimap2-rs"
+repository = "https://github.com/rob-p/minimap2-rs"
 categories = ["science"]
 keywords = ["bioinformatics", "fasta", "alignment", "fastq"]
 exclude = [
@@ -24,16 +24,12 @@ exclude = [
 
 members = []
 
-exclude = [
-    "minimappers2",
-    "fakeminimap2",
-    "minimap2-sys"
-]
+exclude = ["minimappers2", "fakeminimap2", "minimap2-sys"]
 
 [dependencies]
 libc = "0.2"
-simdutf8 = {version = "0.1", optional = true}
-needletail = { version = "0.5", optional = true, default-features = false}
+simdutf8 = { version = "0.1", optional = true }
+needletail = { version = "0.5", optional = true, default-features = false }
 
 # Dep for development
 # minimap2-sys = { path = "./minimap2-sys" }

diff --git a/src/htslib.rs b/src/htslib.rs
@@ -221,7 +221,6 @@ impl Aligner {
     }
 }
 
-
 pub fn mapping_to_record(
     mapping: Option<&Mapping>,
     seq: &[u8],
-Original file line number
+Diff line change
@@ Expand Up / @@ -221,7 +221,6 @@ impl Aligner { @@
         }
     }
     pub fn mapping_to_record(
         mapping: Option<&Mapping>,
         seq: &[u8],
@@ Expand Down @@