Merge pull request #162 from jhudsl/repo-sync/AnVIL_Template/default #21
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| # Candace Savonen Apr 2021 | |
| name: Render all output courses | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main, staging ] | |
| paths: | |
| - '**.Rmd' | |
| - assets/* | |
| - quizzes/* | |
| jobs: | |
| yaml-check: | |
| name: Load user automation choices | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| # Use the yaml-env-action action. | |
| - name: Load environment from YAML | |
| uses: doughepi/yaml-env-action@v1.0.0 | |
| with: | |
| files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | |
| outputs: | |
| toggle_bookdown: "${{ env.RENDER_BOOKDOWN }}" | |
| toggle_coursera: "${{ env.RENDER_COURSERA }}" | |
| toggle_leanpub: "${{ env.RENDER_LEANPUB }}" | |
| make_book_txt: "${{ env.MAKE_BOOK_TXT }}" | |
| rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}" | |
| toggle_quiz_check: "${{ env.CHECK_QUIZZES }}" | |
| render-bookdown: | |
| name: Render bookdown | |
| needs: yaml-check | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| if: ${{needs.yaml-check.outputs.toggle_bookdown == 'yes'}} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| - name: Login as github actions bot | |
| run: | | |
| git config --global --add safe.directory $GITHUB_WORKSPACE | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| # We want a fresh run of the renders each time | |
| - name: Delete old docs/* | |
| run: rm -rf docs/* | |
| # Make sure the link for AnVIL feedback is prepopulated for the specific course | |
| - name: Set up feedback link | |
| id: feedback | |
| run: bash scripts/AnVIL_Feedback_Script.sh | |
| # Run bookdown rendering | |
| - name: Run bookdown render | |
| id: bookdown | |
| run: | | |
| Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all'); | |
| file.copy(from = 'assets', to = 'docs/assets', overwrite = TRUE)" | |
| # Render a student guide if specified. This is a bit clunky because | |
| # Bookdown does not work well if the files aren't named as such in the | |
| # root directory | |
| - name: Run student guide render | |
| if: ${{needs.yaml-check.outputs.render_student_guide == 'yes'}} | |
| id: student_guide | |
| run: | | |
| mkdir tmp1 | |
| mv _bookdown.yml _output.yml tmp1 | |
| mv student-guide/_bookdown.yml student-guide/_output.yml . | |
| Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all')" | |
| mv _bookdown.yml _output.yml student-guide | |
| mv tmp1/_bookdown.yml tmp1/_output.yml . | |
| rm -r tmp1 | |
| # This checks on the steps before it and makes sure that they completed. | |
| # If the renders didn't complete we don't want to commit the file changes | |
| - name: Check on render step | |
| if: steps.bookdown.outcome != 'success' | |
| run: | | |
| echo Bookdown status ${{steps.bookdown.outcome}} | |
| exit 1 | |
| # Commit the rendered bookdown files | |
| - name: Commit rendered bookdown files | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| run: | | |
| git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY} | |
| git fetch origin | |
| git add --force docs/* | |
| git commit -m 'Render bookdown' || echo "No changes to commit" | |
| git pull --allow-unrelated-histories --strategy-option=ours | |
| git push -u origin main || echo "No changes to push" | |
| render-tocless: | |
| name: Render TOC-less version for Leanpub or Coursera | |
| needs: [yaml-check, render-bookdown] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes' || needs.yaml-check.outputs.toggle_leanpub == 'yes'}} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| - name: Login as github-actions bot | |
| run: | | |
| git config --global --add safe.directory $GITHUB_WORKSPACE | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| # Rendered content for Leanpub and Coursera is very similar. | |
| # This job creates a shared scaffold for both. | |
| - name: Run TOC-less version of render | |
| id: tocless | |
| run: Rscript -e "ottrpal::render_without_toc()" | |
| # Commit the TOC-less version files | |
| - name: Commit tocless bookdown files | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| run: | | |
| git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY} | |
| git fetch origin | |
| git add --force docs/no_toc* | |
| git commit -m 'Render toc-less' || echo "No changes to commit" | |
| git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours | |
| git push -u origin main || echo "No changes to push" | |
| render-leanpub: | |
| name: Finish Leanpub prep | |
| needs: [yaml-check, render-tocless] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: jhudsl/ottrpal:main | |
| if: ${{needs.yaml-check.outputs.toggle_leanpub == 'yes'}} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| - name: Login as github actions bot | |
| run: | | |
| git config --global --add safe.directory $GITHUB_WORKSPACE | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| # Create screenshots | |
| - name: Run the screenshot creation | |
| run: | | |
| # Remove old folder | |
| rm -rf resources/chapt_screen_images | |
| # Make new screenshots | |
| curl -o make_screenshots.R https://raw.githubusercontent.com/jhudsl/ottr-reports/main/scripts/make_screenshots.R | |
| chapt_urls=$(Rscript --vanilla make_screenshots.R \ | |
| --git_pat ${{ secrets.GH_PAT }} \ | |
| --repo $GITHUB_REPOSITORY \ | |
| --output_dir resources/chapt_screen_images) | |
| # We want a fresh run of the renders each time | |
| - name: Delete manuscript/ | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| run: | | |
| rm -rf manuscript/ | |
| git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY} | |
| git fetch origin | |
| git add . | |
| git commit -m 'Delete manuscript folder' || echo "No changes to commit" | |
| git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours | |
| git push -u origin main || echo "No changes to push" | |
| - name: Run ottrpal::bookdown_to_embed_leanpub | |
| if: ${{ needs.yaml-check.outputs.toggle_quiz_check == 'no'}} | |
| run: | | |
| Rscript -e "ottrpal::bookdown_to_embed_leanpub( | |
| render = FALSE, \ | |
| chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \ | |
| make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt}}'), \ | |
| quiz_dir = NULL)" | |
| - name: Run ottrpal::bookdown_to_embed_leanpub | |
| if: ${{ needs.yaml-check.outputs.toggle_quiz_check == 'yes'}} | |
| run: | | |
| Rscript -e "ottrpal::bookdown_to_embed_leanpub( | |
| render = FALSE, \ | |
| chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \ | |
| make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt}}'))" | |
| # Commit the rendered Leanpub files | |
| - name: Commit rendered Leanpub files | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| run: | | |
| mkdir -p manuscript | |
| git add --force manuscript/* | |
| git add --force resources/* | |
| git add --force docs/* | |
| git commit -m 'Render Leanpub' || echo "No changes to commit" | |
| git pull --allow-unrelated-histories --strategy-option=ours | |
| git push --force --set-upstream origin main || echo "No changes to push" | |
| render-coursera: | |
| name: Finish Coursera prep | |
| needs: [yaml-check, render-tocless] | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes'}} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| - name: Login as github action | |
| run: | | |
| git config --global --add safe.directory $GITHUB_WORKSPACE | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| # Run Coursera version | |
| - name: Convert Leanpub quizzes to Coursera | |
| if: needs.yaml-check.outputs.toggle_leanpub == 'yes' && needs.yaml-check.outputs.toggle_quiz_check == 'yes' | |
| id: coursera | |
| run: Rscript -e "ottrpal::convert_coursera_quizzes()" | |
| # Commit the rendered bookdown files | |
| # Only commit coursera quizzes if the directory is present | |
| - name: Commit rendered Coursera files | |
| env: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| run: | | |
| git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY} | |
| git fetch origin | |
| if [ -d 'coursera_quizzes' ]; then | |
| git add --force coursera_quizzes/* | |
| fi | |
| git add --force manuscript/* | |
| git add --force resources/* | |
| git add --force docs/* | |
| git commit -m 'Render Coursera quizzes' || echo "No changes to commit" | |
| git pull --rebase --allow-unrelated-histories --strategy-option=ours | |
| git push -u origin main || echo "No changes to push" |