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Fix syntax and consistency #91

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Fix syntax and consistency #91

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12 changes: 6 additions & 6 deletions README.md
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Expand Up @@ -14,12 +14,12 @@ For thorough details, see the preprint: [Biorxiv](https://www.biorxiv.org/conten

## Usage

The [**SpaGCN**](https://github.com/jianhuupenn/SpaGCN) package is an implementation of a garph convolutional network for spatial transcriptomics. With SpaGCN, you can:
The [**SpaGCN**](https://github.com/jianhuupenn/SpaGCN) package is an implementation of a graph convolutional network for spatial transcriptomics. With SpaGCN, you can:

- Preprocess spatial transcriptomics data from various formats.
- Build a graph convolutional network with deep iterative clustering algorithm to identify spatial domains
- identify spatially variable genes for each spatial domain.
- Create mete genes to mark each spatial domains
- Identify spatially variable genes for each spatial domain.
- Create meta genes to mark each spatial domains


## Tutorial
Expand All @@ -39,9 +39,9 @@ https://drive.google.com/drive/folders/1zten54vkjorp26T4iD0ApQGa9ut5eY42?usp=sha
Please install Jupyter in order to open this notebook.

#### New Features! EZ Mode SpaGCN now available.
For users who are new to Python, we provide an Easy Mode SpaGCN. The parameter setting and intermedium steps are simplified.
For users who are new to Python, we provide an Easy Mode SpaGCN. The parameter setting and intermediate steps are simplified.
<br>
Important Notes: This easy mode ONLY have basic functions and is ONLY for analysis purpose.
Important Notes: This easy mode ONLY has basic functions and is ONLY for analysis purpose.
<br>
For method comparison, debugging, customizing parameters, and checking intermedium outputs, please refer to the detailed tutorial above.
<br>
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## Contributing

Souce code: [Github](https://github.com/jianhuupenn/SpaGCN)
Source code: [Github](https://github.com/jianhuupenn/SpaGCN)

We are continuing adding new features. Bug reports or feature requests are welcome.

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