CNV_WES_pipeline

#Requirement install.packages("ExomeDepth") install.packages("seqinr")

Name		Name	Last commit message	Last commit date
Latest commit History 318 Commits
README.md		README.md
annovar.sh		annovar.sh
annovar_results.py		annovar_results.py
bam_to_fastq.sh		bam_to_fastq.sh
button.py		button.py
button_launch.sh		button_launch.sh
cn.mops_cnv_all.r		cn.mops_cnv_all.r
cn.mops_cnv_female.r		cn.mops_cnv_female.r
cn.mops_cnv_male.r		cn.mops_cnv_male.r
cn.mops_launch.sh		cn.mops_launch.sh
cn.mops_results.py		cn.mops_results.py
cnv_interval_objet_run.py		cnv_interval_objet_run.py
cnv_interval_objet_sample.py		cnv_interval_objet_sample.py
cnv_interval_sample_conversion.sh		cnv_interval_sample_conversion.sh
cnv_results.py		cnv_results.py
combine_annot.py		combine_annot.py
exomedepth_cnv.r		exomedepth_cnv.r
exomedepth_launch.sh		exomedepth_launch.sh
exomedepth_results.py		exomedepth_results.py
fastq_to_bam.sh		fastq_to_bam.sh
female_male_lists.py		female_male_lists.py
frequences.py		frequences.py
gatk_all.sh		gatk_all.sh
gatk_detection.sh		gatk_detection.sh
gatk_female.sh		gatk_female.sh
gatk_male.sh		gatk_male.sh
gatk_results.py		gatk_results.py
how_to_mount_disk.sh		how_to_mount_disk.sh
pipeline_cnv.sh		pipeline_cnv.sh
pipeline_results.sh		pipeline_results.sh
reference_indexation.sh		reference_indexation.sh
sex_determination.py		sex_determination.py
targets_preparation.sh		targets_preparation.sh
transmission.py		transmission.py
vcf.py		vcf.py

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