Merge pull request #18 from cyk0315/master

forestcox

DESCRIPTION

@@ -1,19 +1,20 @@
 Package: jsmodule
 Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
-Version: 1.4.4
-Date: 2023-12-07
+Version: 1.5.0
+Date: 2024-02-08
 Authors@R: c(person("Jinseob", "Kim", email = "jinseob2kim@gmail.com", role = c("aut", "cre"),  comment = c(ORCID = "0000-0002-9403-605X")),
              person("Zarathu", role = c("cph", "fnd")),
              person("Hyunki", "Lee", email = "leevenstar@snu.ac.kr", role = c("aut")),
              person("Changwoo", "Lim", email = "limcw@zarathu.com", role = c("aut")),
-             person("Jinhwan", "Kim", email = "jinhwan@zarathu.com", role = c("aut"))
+             person("Jinhwan", "Kim", email = "jinhwan@zarathu.com", role = c("aut")),
+             person("Yoonkyoung", "Jeon", email = "rachel200357@gmail.com", role = c("aut"))
              )
 Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
 Depends: R (>= 3.4.0)
 License: Apache License 2.0 
 Encoding: UTF-8
 RoxygenNote: 7.2.3
-Imports: utils, stats, data.table, shiny, readxl, DT, jstable, labelled, methods, GGally, ggplot2, haven, rstudioapi, shinycustomloader, MatchIt(>= 3.0.0), survey, jskm(>= 0.4.4), survival, purrr, geepack, maxstat, survIDINRI, timeROC, shinyWidgets, pROC, Hmisc, see, readr, RColorBrewer, ggpubr, officer, rvg, epiDisplay
+Imports: utils, stats, data.table, shiny, readxl, DT, jstable, labelled, methods, GGally, ggplot2, haven, rstudioapi, shinycustomloader, MatchIt(>= 3.0.0), survey, jskm(>= 0.4.4), survival, purrr, geepack, maxstat, survIDINRI, timeROC, shinyWidgets, pROC, Hmisc, see, readr, RColorBrewer, ggpubr, officer, rvg, epiDisplay, forestploter
 URL: https://github.com/jinseob2kim/jsmodule
 BugReports: https://github.com/jinseob2kim/jsmodule/issues
 Suggests: 

NAMESPACE

@@ -18,6 +18,10 @@ export(coxModule)
 export(coxUI)
 export(csvFile)
 export(csvFileInput)
+export(forestcoxServer)
+export(forestcoxUI)
+export(forestglmServer)
+export(forestglmUI)
 export(ggpairsModule)
 export(ggpairsModule2)
 export(ggpairsModuleUI1)
@@ -82,8 +86,12 @@ importFrom(data.table,data.table)
 importFrom(data.table,fread)
 importFrom(data.table,fwrite)
 importFrom(data.table,rbindlist)
+importFrom(data.table,setDT)
 importFrom(data.table,setkey)
+importFrom(data.table,setnames)
 importFrom(epiDisplay,tableGlm)
+importFrom(forestploter,forest)
+importFrom(forestploter,forest_theme)
 importFrom(geepack,geeglm)
 importFrom(ggplot2,ggsave)
 importFrom(ggplot2,scale_y_reverse)
@@ -99,6 +107,8 @@ importFrom(haven,read_sav)
 importFrom(jskm,jskm)
 importFrom(jskm,svyjskm)
 importFrom(jstable,CreateTableOneJS)
+importFrom(jstable,TableSubgroupMultiCox)
+importFrom(jstable,TableSubgroupMultiGLM)
 importFrom(jstable,cox2.display)
 importFrom(jstable,mk.lev)
 importFrom(jstable,opt.data)
@@ -130,6 +140,7 @@ importFrom(shinycustomloader,withLoader)
 importFrom(stats,as.formula)
 importFrom(stats,binomial)
 importFrom(stats,chisq.test)
+importFrom(stats,coef)
 importFrom(stats,complete.cases)
 importFrom(stats,confint)
 importFrom(stats,fisher.test)
@@ -150,13 +161,17 @@ importFrom(stats,quantile)
 importFrom(stats,quasibinomial)
 importFrom(stats,shapiro.test)
 importFrom(stats,step)
+importFrom(stats,var)
 importFrom(stats,wilcox.test)
 importFrom(survIDINRI,IDI.INF)
 importFrom(survIDINRI,IDI.INF.OUT)
 importFrom(survey,svycoxph)
 importFrom(survey,svydesign)
 importFrom(survey,svyglm)
 importFrom(survey,svykm)
+importFrom(survey,svymean)
+importFrom(survey,svytable)
+importFrom(survey,svyvar)
 importFrom(survival,Surv)
 importFrom(survival,cluster)
 importFrom(survival,concordance)

NEWS.md

@@ -1,3 +1,10 @@
+# jsmodule 1.5.0
+
+## New module: Subgroup analysis with forestplot (Thanks for [Yoonkyoung Jeon](https://github.com/cyk0315))
+
+* forestcox (`forestcoxUI`, `forestcoxServer`)
+* forestglm (`forestglmUI`, `forestglmServer`)
+
 # jsmodule 1.4.4
 
 ## Update: Add "reverse y-axis" option to lineplot