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Retire vrfy job (NOAA-EMC#2080)
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Retires the `vrfy` job from the global-workflow system. All associated
scripts, configs, and references to the job are removed.

Additionally, the switches listed in RTD were updated to reflect new
ones added in other PRs for issue NOAA-EMC#235.

Resolves NOAA-EMC#2069
Refs NOAA-EMC#235
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@KateFriedman-NOAA
KateFriedman-NOAA authored Nov 18, 2023
1 parent ea386ab commit 62d8e99
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99 changes: 55 additions & 44 deletions docs/source/configure.rst
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Expand Up @@ -4,47 +4,58 @@ Configure Run

The global-workflow configs contain switches that change how the system runs. Many defaults are set initially. Users wishing to run with different settings should adjust their $EXPDIR configs and then rerun the ``setup_xml.py`` script since some configuration settings/switches change the workflow/xml ("Adjusts XML" column value is "YES").

+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| Switch | What | Default | Adjusts XML | More Details |
+================+==============================+===============+=============+===================================================+
| APP | Model application | ATM | YES | See case block in config.base for options |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DOIAU | Enable 4DIAU for control | YES | NO | Turned off for cold-start first half cycle |
| | with 3 increments | | | |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DOHYBVAR | Run EnKF | YES | YES | Don't recommend turning off |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DONST | Run NSST | YES | NO | If YES, turns on NSST in anal/fcst steps, and |
| | | | | turn off rtgsst |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DO_AWIPS | Run jobs to produce AWIPS | NO | YES | downstream processing, ops only |
| | products | | | |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DO_BUFRSND | Run job to produce BUFR | NO | YES | downstream processing |
| | sounding products | | | |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DO_GEMPAK | Run job to produce GEMPAK | NO | YES | downstream processing, ops only |
| | products | | | |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DO_VRFY | Run vrfy job | NO | YES | Whether to include vrfy job (GSI monitoring, |
| | | | | tracker, VSDB, fit2obs) |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| DO_METP | Run METplus jobs | YES | YES | One cycle spinup |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| EXP_WARM_START | Is experiment starting warm | .false. | NO | Impacts IAU settings for initial cycle. Can also |
| | (.true.) or cold (.false)? | | | be set when running ``setup_expt.py`` script with |
| | | | | the ``--start`` flag (e.g. ``--start warm``) |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| HPSSARCH | Archive to HPPS | NO | Possibly | Whether to save output to tarballs on HPPS |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| LOCALARCH | Archive to a local directory | NO | Possibly | Instead of archiving data to HPSS, archive to a |
| | | | | local directory, specified by ATARDIR. If |
| | | | | LOCALARCH=YES, then HPSSARCH must =NO. Changing |
| | | | | HPSSARCH from YES to NO will adjust the XML. |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| QUILTING | Use I/O quilting | .true. | NO | If .true. choose OUTPUT_GRID as cubed_sphere_grid |
| | | | | in netcdf or gaussian_grid |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
| WRITE_DOPOST | Run inline post | .true. | NO | If .true. produces master post output in forecast |
| | | | | job |
+----------------+------------------------------+---------------+-------------+---------------------------------------------------+
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| Switch | What | Default | Adjusts XML | More Details |
+================+==================================+===============+=============+===================================================+
| APP | Model application | ATM | YES | See case block in config.base for options |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DOIAU | Enable 4DIAU for control | YES | NO | Turned off for cold-start first half cycle |
| | with 3 increments | | | |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DOHYBVAR | Run EnKF | YES | YES | Don't recommend turning off |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DONST | Run NSST | YES | NO | If YES, turns on NSST in anal/fcst steps, and |
| | | | | turn off rtgsst |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_AWIPS | Run jobs to produce AWIPS | NO | YES | downstream processing, ops only |
| | products | | | |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_BUFRSND | Run job to produce BUFR | NO | YES | downstream processing |
| | sounding products | | | |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_GEMPAK | Run job to produce GEMPAK | NO | YES | downstream processing, ops only |
| | products | | | |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_FIT2OBS | Run FIT2OBS job | YES | YES | Whether to run the FIT2OBS job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_TRACKER | Run tracker job | YES | YES | Whether to run the tracker job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_GENESIS | Run genesis job | YES | YES | Whether to run the genesis job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_GENESIS_FSU | Run FSU genesis job | YES | YES | Whether to run the FSU genesis job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_VERFOZN | Run GSI monitor ozone job | YES | YES | Whether to run the GSI monitor ozone job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_VERFRAD | Run GSI monitor radiance job | YES | YES | Whether to run the GSI monitor radiance job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_VMINMON | Run GSI monitor minimization job | YES | YES | Whether to run the GSI monitor minimization job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| DO_METP | Run METplus jobs | YES | YES | One cycle spinup |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| EXP_WARM_START | Is experiment starting warm | .false. | NO | Impacts IAU settings for initial cycle. Can also |
| | (.true.) or cold (.false)? | | | be set when running ``setup_expt.py`` script with |
| | | | | the ``--start`` flag (e.g. ``--start warm``) |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| HPSSARCH | Archive to HPPS | NO | Possibly | Whether to save output to tarballs on HPPS |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| LOCALARCH | Archive to a local directory | NO | Possibly | Instead of archiving data to HPSS, archive to a |
| | | | | local directory, specified by ATARDIR. If |
| | | | | LOCALARCH=YES, then HPSSARCH must =NO. Changing |
| | | | | HPSSARCH from YES to NO will adjust the XML. |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| QUILTING | Use I/O quilting | .true. | NO | If .true. choose OUTPUT_GRID as cubed_sphere_grid |
| | | | | in netcdf or gaussian_grid |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
| WRITE_DOPOST | Run inline post | .true. | NO | If .true. produces master post output in forecast |
| | | | | job |
+----------------+----------------------------------+---------------+-------------+---------------------------------------------------+
6 changes: 2 additions & 4 deletions docs/source/jobs.rst
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Expand Up @@ -18,10 +18,10 @@ An experimental run is different from operations in the following ways:

* Addition steps in experimental mode:

- verification (vrfy)

- archive (arch)

- cleanup (cleanup)

Downstream jobs (e.g. awips, gempak, etc.) are not included in the diagram. Those jobs are not normally run in developmental tests.

=============================
Expand Down Expand Up @@ -71,8 +71,6 @@ Jobs in the GFS Configuration
+-------------------+-----------------------------------------------------------------------------------------------------------------------+
| postN | Runs the post processor. |
+-------------------+-----------------------------------------------------------------------------------------------------------------------+
| vrfy | Runs the verification tasks. |
+-------------------+-----------------------------------------------------------------------------------------------------------------------+
| waveinit | Runs wave initialization step. |
+-------------------+-----------------------------------------------------------------------------------------------------------------------+
| waveprep | Runs wave prep step. |
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2 changes: 1 addition & 1 deletion env/AWSPW.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanlrun"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/CONTAINER.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/HERA.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/JET.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/ORION.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/S4.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen efcs epos"
echo "postsnd awips gempak"
exit 1
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2 changes: 1 addition & 1 deletion env/WCOSS2.env
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Expand Up @@ -5,7 +5,7 @@ if [[ $# -ne 1 ]]; then
echo "Must specify an input argument to set runtime environment variables!"
echo "argument can be any one of the following:"
echo "atmanlrun atmensanlrun aeroanlrun landanl"
echo "anal sfcanl fcst post vrfy metp"
echo "anal sfcanl fcst post metp"
echo "eobs eupd ecen esfc efcs epos"
echo "postsnd awips gempak"
exit 1
Expand Down
61 changes: 0 additions & 61 deletions jobs/rocoto/vrfy.sh
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