Published manuscript

This release includes the publication of the mPies publication, included in the README.md

added functionality to download functional subsets

This release allows to create functional subsets (based on gene and protein names) for taxonomic groups.

Fixed per group filtering

corrected bug in filtering per protein group

mPies first release

mPies: metaProteomics in environmental sciences

First release v0.9 of mPies!

mPies is a workflow to create annotated databases for metaproteomic analysis.

This workflow uses three different databases for a metagenome (i) OTU-table, (ii) assembled-derived, (iii) and
unassembled-derived to build a consensus of these databases and increase the mapping sensitivity.

mPies consists of two parts: database creation and annotation. Both parts are written in Snakemake.

Workflow

• Database creation
  • Preprocessing
  • Amplicon-derived proteome file
  • Assembled-derived proteome file
  • Non-Assembled-derived proteome file
  • Postprocessing
• Annotation
  • Preprocessing
  • Taxonomic classification
  • Functional consensus