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josegcpa/README.md

Hi! I’m José Guilherme de Almeida, a post-doctoral researcher with the Computational Clinical Imaging Group at the Champalimaud Foundation. I am interested in developing robust predictive methods for (semi-)automated diagnosis and prognosis from clinical images and data.

Previously, I did my PhD with Moritz Gerstung and George S. Vassiliou at the EMBL-EBI and my MSc thesis with Irina Moreira at Universidade de Coimbra.

I am interested in deep-learning, computer vision and computational oncobiology. I am also a big fan of data visualization (i.e. Pure Ideology!, one of my favourite projects) and do some musical production on my free time.

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  1. haemorasis haemorasis Public

    Blood cell detection pipeline in peripheral blood smears

    Python 6 1

  2. clonal_dynamics clonal_dynamics Public

    Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"

    R 3 1

  3. wbs-prediction wbs-prediction Public

    Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides

    R 1 1

  4. labelling-server labelling-server Public

    Local flask server to label images with a database in sqlite3

    HTML

  5. torch_nlm torch_nlm Public

    PyTorch-based implementation of non-local means with GPU support.

    Jupyter Notebook 6 1

  6. sondagens sondagens Public

    Ferramenta para análise de sondagens (em português)

    R 2