Make test dependent on limma version #111
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on: | |
push: | |
paths: ["**.[rR]", "**.[qrR]md", "**.[rR]markdown", "**.[rR]nw", "**.[rR]profile"] | |
name: Style | |
env: | |
GITHUB_ACTOR: "actions-user" | |
jobs: | |
style: | |
runs-on: ubuntu-latest | |
permissions: | |
contents: write | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- name: Install dependencies | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::styler, any::roxygen2 | |
needs: styler | |
- name: Enable styler cache | |
run: styler::cache_activate() | |
shell: Rscript {0} | |
- name: Determine cache location | |
id: styler-location | |
run: | | |
cat( | |
"location=", | |
styler::cache_info(format = "tabular")$location, | |
"\n", | |
file = Sys.getenv("GITHUB_OUTPUT"), | |
append = TRUE, | |
sep = "" | |
) | |
shell: Rscript {0} | |
- name: Cache styler | |
uses: actions/cache@v4 | |
with: | |
path: ${{ steps.styler-location.outputs.location }} | |
key: ${{ runner.os }}-styler-${{ github.sha }} | |
restore-keys: | | |
${{ runner.os }}-styler- | |
${{ runner.os }}- | |
- name: Style | |
run: styler::style_pkg() | |
shell: Rscript {0} | |
- name: Commit and push changes | |
run: | | |
if FILES_TO_COMMIT=($(git diff-index --name-only ${{ github.sha }} \ | |
| egrep --ignore-case '\.(R|[qR]md|Rmarkdown|Rnw|Rprofile)$')) | |
then | |
git config --local user.name "$GITHUB_ACTOR" | |
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
git commit ${FILES_TO_COMMIT[*]} -m "Style code (GHA)" | |
git pull --ff-only | |
git push origin | |
else | |
echo "No changes to commit." | |
fi |