LiveCellImaging Toolkit

Copyrighted by Somponnat Sampattavanich 2013-2014. May be used for academic research purposes when citing this source. Commercial usages are prohibited without written permission.


General Procedure for booting LiveCellImaging Toolkit

1) Download all necessary files from our github repository to the desired folder

https://github.com/somponnat/Somponnat_SingleCellAnalysis.git

2) Add the downloaded folder to MATLAB path

3) Call the following command for initiating different module

CellTracking Module:
>> CellTracking

FRETPlotting Module:
>> FRETPlotting

SignalClustering Module:
>> SignalClustering

4) For Metamorph file format, click '...' button to locate the metamorph ND file. Click 'Load' after the ND file box to populate the available image sites. 

   For PE Harmony export file, click 'PE individual tiff' and change the 'Source' folder to where the images are stored.
 
   For Tiff stack, click 'Tiff stack' and click '...' button to locate the image file.