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SJTU School of Medicine
- Shanghai
- https://fzhang.bioinfo-lab.com
Stars
A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.
Predicting chromatin structure and developmental potential using single-cell chromatin accessibility
Cell age determination by scATAC-seq and bulk-ATAC-seq
SCTC: inference of developmental potential from single-cell transcriptional complexity
An integrated package to process diploid Hi-C data
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
python module to plot beautiful and highly customizable genome browser tracks
The database for spatially resolved transcriptomics
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
Feature-weight based measurement of cancerous transcriptome using cohort-wide and sample-specific information
Estimation of Single-Cell Potency with Single Cell Entropy
Automatic and optimised consensus clustering of one or more heterogeneous datasets
InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
Python client for Baidu Yun (Personal Cloud Storage) 百度云/百度网盘Python客户端
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
Computing statistics for overlapping sets of intervals