not working: test plugin pattern with yml

src/FileReader.java

@@ -0,0 +1,19 @@
+import java.io.File;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.fasterxml.jackson.dataformat.yaml.YAMLFactory;
+
+import models.config.ConfigFile;
+
+public class FileReader {
+    // public FileReader() {
+
+    // }
+
+    // public ConfigFile readConfig(String path) {
+    //     File file = new File("src/simulationModels/test.json");
+
+    //     ObjectMapper mapper = new ObjectMapper();
+    //     ConfigFile config = mapper.readValue(file, ConfigFile.class);
+    // }
+}

src/functions/FunctionCollector.java

@@ -0,0 +1,31 @@
+package functions;
+
+import java.util.ArrayList;
+import java.util.List;
+
+public class FunctionCollector {
+    // XCompiler unable to compile <> with type <IFunction>, so left generic
+    private List functions;
+
+    public FunctionCollector() {
+        init();
+    }
+
+    public void init() {
+        functions = new ArrayList();
+    }
+
+    public void run() {
+        for (IFunction function : functions) {
+            function.run();
+        }
+    }
+
+    public void add(IFunction function) {
+        functions.add(function);
+    }
+
+    public List getFunctions() {
+        return functions;
+    }
+}

src/functions/Growth.java

@@ -0,0 +1,11 @@
+package functions;
+
+public class Growth implements IFunction {
+    public void init() {
+        println("init Growth");
+    }
+
+    public void run() {
+        println("run Growth");
+    }
+}

src/functions/IFunction.java

@@ -0,0 +1,6 @@
+package functions;
+
+public interface IFunction {
+    void init();
+    void run();
+}

src/functions/LightInterception.java

@@ -0,0 +1,11 @@
+package functions;
+
+public class LightInterception implements IFunction {
+    public void init() {
+        println("init LightInterception");
+    }
+
+    public void run() {
+        println("run LightInterception");
+    }
+}

src/graph.xml

@@ -1,55 +1,17 @@
 <?xml version="1.0" encoding="UTF-8"?><graph xmlns:gx="http://grogra.de/xmlpersistence" xmlns="http://grogra.de/xmlpersistence">
  <node root="MainGraph" id="0" type="de.grogra.graph.impl.Node">
   <data gx:name="extentIndex" gx:value="7"/>
-  <node id="14737" type="de.grogra.rgg.RGGRoot" edges="+">
-   <node id="14739" type="organs$Bud" edges="-">
-    <data gx:name="radius" gx:value="0.1"/>
-    <data gx:name="rank" gx:value="1"/>
-    <data gx:name="phyllo" gx:value="1"/>
-    <data gx:name="order" gx:value="1"/>
-   </node>
-   <node id="14740" type="de.grogra.turtle.M" edges="-">
-    <data gx:name="length" gx:value="50.0"/>
-    <node id="14741" type="de.grogra.turtle.RU" edges="-">
-     <data gx:name="angle" gx:value="180.0"/>
-     <node id="14742" type="light$MyLight" edges="-">
-      <object gx:name="light" gx:type="de.grogra.imp3d.objects.SpotLight">
-       <object gx:name="color" gx:value="false 1.0 1.0 1.0"/>
-       <data gx:name="shadowless" gx:value="false"/>
-       <data gx:name="visualize" gx:value="false"/>
-       <data gx:name="numberofrays" gx:value="500"/>
-       <data gx:name="raylength" gx:value="5.0"/>
-       <data gx:name="power" gx:value="200.0"/>
-       <data gx:name="attenuationExponent" gx:value="0.0"/>
-       <data gx:name="attenuationDistance" gx:value="50.0"/>
-       <data gx:name="innerAngle" gx:value="0.3926991"/>
-       <data gx:name="outerAngle" gx:value="0.5235988"/>
-      </object>
-     </node>
-    </node>
-   </node>
+  <node id="14968" type="de.grogra.rgg.RGGRoot" edges="+">
+   <node id="14969" type="de.grogra.rgg.Axiom" edges="-"/>
   </node>
  </node>
  <node root="MetaGraph" id="1" type="de.grogra.graph.impl.Node">
   <data gx:name="extentIndex" gx:value="7"/>
-  <node id="14734" type="main" edges="+">
+  <node id="14966" type="main" edges="+">
    <data gx:name="extentIndex" gx:value="7"/>
    <object gx:name="initialTurtleState" color="14" length="100.0" diameter="0.1" tropism="0.0" parameter="0.0" carbon="0.0" heartwood="0.0" internodeCount="0"/>
-   <object gx:name="lm" gx:type="de.grogra.rgg.LightModel">
-    <data gx:name="rayCount" gx:value="100000"/>
-    <data gx:name="depth" gx:value="5"/>
-    <data gx:name="minPower" gx:value="0.001"/>
-    <data gx:name="seed" gx:value="0"/>
-    <data gx:name="threadCount" gx:value="0"/>
-    <object gx:name="spectrumFactory" gx:type="de.grogra.ray.physics.Spectrum3d" gx:value="0.0 0.0 0.0"/>
-    <array gx:name="visibleLayers" gx:value="true true true true true true true true true true true true true true true true"/>
-   </object>
   </node>
-  <node id="14735" type="light" edges="+">
-   <data gx:name="extentIndex" gx:value="7"/>
-   <object gx:name="initialTurtleState" color="14" length="100.0" diameter="0.1" tropism="0.0" parameter="0.0" carbon="0.0" heartwood="0.0" internodeCount="0"/>
-  </node>
-  <node id="14736" type="organs" edges="+">
+  <node id="14967" type="Leaf" edges="+">
    <data gx:name="extentIndex" gx:value="7"/>
    <object gx:name="initialTurtleState" color="14" length="100.0" diameter="0.1" tropism="0.0" parameter="0.0" carbon="0.0" heartwood="0.0" internodeCount="0"/>
   </node>

src/main.rgg

@@ -1,52 +1,43 @@
-import static light.*;
-import static organs.*;
-
-const float GOLDEN_ANGLE = 137.5;
-const float BRANCH_ANGLE = 50;
-const float LEAF_ANGLE = 70;
-const int PHYLLOCHRON = 1;
-
-protected void init()
-[
-Axiom ==> Bud(1, PHYLLOCHRON, 1);
-// light source is placed
-// above the scene
-==>> ^ M(50) RU(180) MyLight;
-]
-public void run()
-[
-    Bud(r, p, o), (p > 0) ==> Bud(r, p-1, o);
-    b:Bud(r, p, o), (r < 10 && p == 0 && o < 4) ==> if (forall(distance(b, (* Internode *)) > 0.6)) (
-        RV(-0.1) Internode Node
-        [ RL(BRANCH_ANGLE) Bud(r, PHYLLOCHRON, o+1) ]
-        [ RL(LEAF_ANGLE) Leaf(0f) ]
-        RH(GOLDEN_ANGLE) RV(-0.1) Internode Bud(r+1, PHYLLOCHRON, o)
-    );
-
-    Bud(r, p, o), (r == 10) ==> RV(-0.1) Internode RV(-0.1) Internode Flower;
-]
-
-// light model instance
-// 100000: number of random rays
-// 5: recursion depth (nb. of reflections)
-LightModel lm = new LightModel(100000, 5);
-
-public void grow() {
-// apply growth rules
-run();
-// compute light
-lm.compute();
-// calculate the amount of light
-// (integrated over the whole spectrum),
-// absorbed by a leaf
-absorb();
-}
+import java.util.List;
+import java.util.ArrayList;
+import java.io.File;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.fasterxml.jackson.databind.JsonNode;
+import com.fasterxml.jackson.dataformat.yaml.YAMLFactory;
+
+import models.*;
+import functions.*;
+
+static List organs = new ArrayList();
+
+protected void init() {
+
+    Leaf leaf = new Leaf();
+    File organConfig = new File("/var/model/src/organConfig.yml");
+
+    ObjectMapper mapper = new ObjectMapper(new YAMLFactory());
+    JsonNode organTree = mapper.readTree(organConfig);
+
+    for (JsonNode organNode : organTree) {
+        // Create organ instances
+        String organName = organNode.get("name");
+        Class organClass = Class.forName(organName);
+        GenericOrgan organ = (GenericOrgan) organClass.getDeclaredConstructor().newInstance();
+
+        JsonNode functions = organNode.get("functions");
+
+        for (JsonNode functionName : functions) {
+            String className = functionName.asText();
+            Class functionClass = Class.forName(className);
+            IFunction function = (IFunction) functionClass.getDeclaredConstructor().newInstance();
 
-protected void absorb() [
-lf:Leaf ::> {
-// 2.25 - conversion factor W -> PAR
-// (photosynthetically active radiation [mikro mol/m^2/s])
-lf[al] = lm.getAbsorbedPower3d(lf).integrate() * 2.25;
-//println(lf[al]);
+            organ.getCollector().add(function);
+        }
+    }
 }
-]
+public void run() {
+    for (GenericOrgan organ : organs) {
+        organ.run();
+    }
+}

src/models/Fruit.rgg

@@ -0,0 +1,5 @@
+import models.GenericOrgan;
+
+public class Fruit extends GenericOrgan {
+
+}

src/models/GenericOrgan.java

@@ -0,0 +1,15 @@
+package models;
+
+import functions.FunctionCollector;
+
+public abstract class GenericOrgan {
+    private FunctionCollector collector;
+
+    public FunctionCollector getCollector() {
+        return collector;
+    }
+
+    public void run() {
+        collector.run();
+    }
+}

src/models/Leaf.rgg

@@ -0,0 +1,4 @@
+import models.GenericOrgan;
+
+public class Leaf extends GenericOrgan {
+}

src/models/config/BooleanField.java

@@ -0,0 +1,11 @@
+package models.config;
+
+public class BooleanField extends Field {
+
+    private boolean value;
+
+    public BooleanField(String name, boolean value) {
+        super(name);
+        this.value = value;
+    }
+}

src/models/config/ConfigFile.java

@@ -0,0 +1,24 @@
+package models.config;
+
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.Map;
+
+import com.fasterxml.jackson.annotation.*;
+
+public class ConfigFile {
+    private Map fields;
+
+    public ConfigFile() {
+        fields = new HashMap();
+    }
+
+    @JsonAnySetter
+    public void addField(String name, String value) {
+        fields.put(name, value);
+    }
+
+    public Map getFields() {
+        return fields;
+    }
+}

src/models/config/Field.java

@@ -0,0 +1,13 @@
+package models.config;
+
+abstract class Field {
+    private String name;
+
+    public Field(String name) {
+        this.name = name;
+    }
+
+    public String getName() {
+        return name;
+    }
+}

src/organConfig.yml

@@ -0,0 +1,10 @@
+leaf:
+  name: models.Leaf
+  functions:
+    - functions.Growth
+    - functions.LightInterception
+
+fruit:
+  name: models.Fruit
+  functions:
+    - functions.Growth