- alt_string_utils.py: Extracts information from ALT column of VCF file.
- assign_svtype.py: Assigns SVTYPE to VCF files with no SVTYPE assignment (ex. Svaba output) based on the record and its mate strand orientation.
- convert_svtype_to_BND.py: Converts all SVTYPEs, including INS, DELs in indel encoding into adjacencies with pair of breakends.
- find_matching_breakends.py: Finds if each breakend in query vcf file has its match in target vcf file.
-
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Some useful scripts to process structural variant calls
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jykr/svutils
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Some useful scripts to process structural variant calls