Transcriptome analysis of Yellow Canopy Syndrome (YCS) in sugarcane

slurm scripts for running on TACC's Stampede
scripts:
- ycsQCdata.slurm: fastqc and trimmomatic
- ycsReadNorm.slurm: read normalization using Trinity
- ycs_assemble_trinity.sh: TACC script splitter to run Trinity assembly
- ycsQCassembly.slurm: assessing Trinity assembly
test/
- scripts for running single sets of files, and testing parameters for different steps

Name		Name	Last commit message	Last commit date
Latest commit History 105 Commits
PBS_scripts		PBS_scripts
abundance		abundance
assembly		assembly
assemblyQC		assemblyQC
dataPrep		dataPrep
domain		domain
test		test
.gitignore		.gitignore
N50_Stats.py		N50_Stats.py
README.md		README.md
change_fasta_header.py		change_fasta_header.py

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