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Fix and extend CI testing #169

Fix and extend CI testing

Fix and extend CI testing #169

Workflow file for this run

name: Tests
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
Testing:
runs-on: ${{ matrix.os }}
continue-on-error: true
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest ]
python-version: [ "3.10" ]
snakemake-version: [ "7" ]
include:
- python-version: "3.8"
snakemake-version: "7"
- python-version: "3.9"
snakemake-version: "7"
- python-version: "3.10"
snakemake-version: "7"
- python-version: "3.11"
snakemake-version: "7"
- python-version: "3.11"
snakemake-version: "8"
- python-version: "3.11"
snakemake-version: "8.0"
- python-version: "3.11"
snakemake-version: "8.1"
- python-version: "3.11"
snakemake-version: "8.2"
- python-version: "3.11"
snakemake-version: "8.3"
- python-version: "3.11"
snakemake-version: "8.4"
- python-version: "3.11"
snakemake-version: "8.5"
steps:
- uses: actions/checkout@v3
- uses: mamba-org/setup-micromamba@v1
with:
micromamba-version: '1.5.6-0'
environment-name: test-env
condarc: |
channels:
- conda-forge
- bioconda
- defaults
create-args: >-
python=${{ matrix.python-version }}
snakemake-minimal=${{ matrix.snakemake-version }}
mamba
make
init-shell: bash
cache-environment: true
post-cleanup: 'all'
- name: Versions
shell: bash -el {0}
run: |
micromamba activate test-env
python -v
snakemake -v
- name: Make bigtest
shell: bash -el {0}
run: |
micromamba activate test-env
make bigtest