Fixed merge None type error. Added wb3 as default compression level f… #203
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| env: | |
| PREFIX: "/usr/local/" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macOS-14] | |
| #os: [ubuntu-latest, macOS-11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set correct paths for Homebrew on macOS | |
| if: matrix.os == 'macOS-14' | |
| run: | | |
| export BREW_PREFIX="$(brew --prefix)" | |
| export PREFIX="$(brew --prefix)" | |
| export PATH="$BREW_PREFIX/bin:$PATH" | |
| export LIBRARY_PATH="$BREW_PREFIX/lib:$LIBRARY_PATH" | |
| export PKG_CONFIG_PATH="$BREW_PREFIX/lib/pkgconfig:$PKG_CONFIG_PATH" | |
| export MACOSX_DEPLOYMENT_TARGET=14.0 | |
| echo "MACOSX_DEPLOYMENT_TARGET=14.0" >> $GITHUB_ENV | |
| brew install libomp | |
| - name: Install project dependencies | |
| run: which python; python -m pip install -r requirements.txt | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.21.3 | |
| env: | |
| CIBW_PROJECT_REQUIRES_PYTHON: ">=3.10,<3.13" # >=3.8 <3.12 | |
| CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *musl* " # cp311-macosx* | |
| CIBW_ARCHS_MACOS: "x86_64 arm64" | |
| CIBW_ARCHS_LINUX: "auto" | |
| CIBW_BEFORE_ALL_MACOS: | | |
| sudo bash ci/osx-deps | |
| CIBW_BEFORE_ALL_LINUX: | | |
| bash ci/manylinux-deps | |
| CIBW_BEFORE_BUILD_MACOS: | | |
| ln -s /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11/cpython/longintrepr.h /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11 | |
| which python3 | |
| python3 -m pip install -r requirements.txt | |
| CIBW_BEFORE_BUILD_LINUX: pip install -r requirements.txt | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: | | |
| delocate-wheel -w {dest_dir} -v {wheel} --require-target-macos-version 14.0 | |
| CIBW_TEST_SKIP: "*-macosx_arm64" | |
| CIBW_TEST_REQUIRES: | | |
| cython click>=8.0 numpy scipy pandas pysam>=0.22.0 networkx>=2.4 scikit-learn>=0.22 sortedcontainers lightgbm | |
| CIBW_TEST_COMMAND: dysgu test --verbose | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheelhouse-${{ matrix.os }}-${{ github.run_id }} | |
| path: ./wheelhouse/*.whl |