associatr is an R package for manhattan and regional plots. By default only variants with p < 0.001 are plotted in the manhattan plot. Region plots use LDlinkR to retrieve LD and SQL queries to UCSC genome browser to get biological context.
devtools::install_github("kenhanscombe/associatr", dependencies = TRUE, force = TRUE)
Note. region requires an
LDlinkR personal access token.
Request token.