Merge branch 'maintenance/v0.2.x' into maintenance/v0.3.x #94
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name: CI | |
on: ["push", "pull_request"] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.7] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install pytest pytest-mock pytest-cov | |
pip install -r requirements.txt | |
python setup.py install | |
python -m pip install fcsparser tensorflow==1.15 fcswrite gpflow protobuf==3.20 | |
git clone https://github.com/KrishnaswamyLab/SAUCIE | |
git clone https://github.com/ManchesterBioinference/GrandPrix | |
cd GrandPrix | |
python setup.py install | |
cd .. | |
git clone https://github.com/epierson9/ZIFA | |
cd ZIFA | |
python setup.py install | |
cd .. | |
- name: Test with pytest | |
run: | | |
pytest --cov CytofDR --cov-report xml | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v2 | |
with: | |
fail_ci_if_error: false |