Skip to content

Merge branch 'maintenance/v0.2.x' into maintenance/v0.3.x #94

Merge branch 'maintenance/v0.2.x' into maintenance/v0.3.x

Merge branch 'maintenance/v0.2.x' into maintenance/v0.3.x #94

Workflow file for this run

name: CI
on: ["push", "pull_request"]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.7]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install pytest pytest-mock pytest-cov
pip install -r requirements.txt
python setup.py install
python -m pip install fcsparser tensorflow==1.15 fcswrite gpflow protobuf==3.20
git clone https://github.com/KrishnaswamyLab/SAUCIE
git clone https://github.com/ManchesterBioinference/GrandPrix
cd GrandPrix
python setup.py install
cd ..
git clone https://github.com/epierson9/ZIFA
cd ZIFA
python setup.py install
cd ..
- name: Test with pytest
run: |
pytest --cov CytofDR --cov-report xml
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
fail_ci_if_error: false