Create a dockerized VM for RStudio

This Docker image enables testing dev versions of cmdstan and cmdstanr.

Settings

OS is Ubuntu 20.04.
R v4.0.5.
RStudio.
cmdstan - https://github.com/stephensrmmartin/cmdstan/releases/tag/v2.26.1-2-RVI-Lowrank.
cmdstanr - https://github.com/stephensrmmartin/cmdstanr/tree/feature/rvi.

Run and build image

Be sure to increase docker memory to at least 5GB!

Run image: $ docker build -t klgeyer/docker-rvi-stan .

Build container: $ docker run -p 8787:8787 -e PASSWORD=123 klgeyer/docker-rvi-stan

Copy directory if building container: $ docker run -p 8787:8787 -e PASSWORD=123 -d -P --name doit -v /Users/kellygeyer/Documents/github/stan-rvi-models:/code klgeyer/docker-rvi-stan

Contents

1. Dockerfile
2. scripts - Directory of supporting bash scripts
3. Rscripts - Direcotry of R scripts
4. old-stuff - Diretory of depreciated code

References

1. https://blog.cloud66.com/how-to-get-code-into-a-docker-container/
2. https://hub.docker.com/r/rocker/rstudio
3. https://colinfay.me/docker-r-reproducibility/