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@khanlab

Khan Computational Imaging Lab

  • 12 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 49 13

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 14

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 113 repositories
  • cc-slurm Public

    This profile configures Snakemake to run on Compute Canada with SLURM (e.g. graham).

    khanlab/cc-slurm’s past year of commit activity
    Python 2 MIT 3 0 1 Updated Nov 25, 2024
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 2 Updated Nov 23, 2024
  • pythondeps-snakeanat Public

    Python dependencies for snakeanat

    khanlab/pythondeps-snakeanat’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Nov 23, 2024
  • cvpl_tools Public

    A Python package for utilities and classes related to the file I/O, dataset record keeping for image processing and computer vision.

    khanlab/cvpl_tools’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Nov 22, 2024
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Python 1 0 1 3 Updated Nov 22, 2024
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated Nov 22, 2024
  • tar2bids Public
    khanlab/tar2bids’s past year of commit activity
    Python 7 GPL-3.0 9 3 4 Updated Nov 20, 2024
  • cbs-server-billing Public
    khanlab/cbs-server-billing’s past year of commit activity
    Python 0 1 0 0 Updated Nov 8, 2024
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Nov 1, 2024
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Nov 1, 2024
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