- https://www.synapse.org/#!Synapse:syn26232086/docker
- Connect to the RStudio web interface from the AWS console.
- Clone the repo so you can use the Make commands and scripts:
git clone https://github.com/ki-tools/syn-compute-docker.git
- Go into the repo directory:
cd syn-compute-docker
- Install and configure the base packages:
make install_notebook
- (Optional) Install and configure R 4.x:
make install_notebook_r
- (Optional) Install and configure R 4.x:
- SSH into your EC2 compute instance.
- Clone the repo so you can use the Make commands and scripts:
git clone https://github.com/ki-tools/syn-compute-docker.git
- Go into the repo directory:
cd syn-compute-docker
- Pull the docker image from Synapse:
make pull
- Start and run the container:
make run
- Connect to a shell in the running container:
make connect
- Build the docker image:
make build
- Start the container:
make run
- Connect to the container:
make connect
- Stop the container:
make stop
See Makefile for all commands
See Dockerfile for installed packages.