bugfix: remove dependency on xgboost #111
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, develop] | |
| pull_request: | |
| branches: [main, master, develop] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| # - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: '3.0'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y pandoc pandoc-citeproc libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install R dependencies | |
| run: | | |
| install.packages("remotes", repos="https://cloud.r-project.org") | |
| remotes::install_github("kkholst/gof") | |
| remotes::install_deps(".", dep=T, upgrade=T) | |
| remotes::install_cran(c("pkgdown","covr","rcmdcheck")) | |
| remotes::install_bioc("Rgraphviz", upgrade="always") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Webpage deployment | |
| if: success() && contains('refs/heads/main', github.ref) | |
| run: | | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
| Rscript -e 'remotes::install_local()' | |
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' | |
| - name: Code Coverage | |
| if: success() && contains('refs/heads/main', github.ref) | |
| run: covr::codecov(type=c("tests", "examples")) | |
| shell: Rscript {0} |