updating CI (caching of R packages) and proper namespace calling of l… #113
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master, develop] | |
pull_request: | |
branches: [main, master, develop] | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
# - {os: ubuntu-latest, r: 'release'} | |
- {os: ubuntu-latest, r: '3.0'} | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y pandoc pandoc-citeproc libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
dependencies: '"all"' | |
cache: true | |
extra-packages: | | |
any::rcmdcheck | |
any::pkgdown | |
any::remotes | |
any::covr | |
needs: check | |
# - name: Cache R packages | |
# uses: actions/cache@v3 | |
# with: | |
# path: ${{ env.R_LIBS_USER }} | |
# key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
# restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install R dependencies | |
run: | | |
remotes::install_github("kkholst/gof") | |
remotes::install_deps(".", dep=T, upgrade=T) | |
# remotes::install_bioc("Rgraphviz", upgrade="always") | |
shell: Rscript {0} | |
- name: Check | |
env: | |
_R_CHECK_FORCE_SUGGESTS_: false | |
run: | | |
options(crayon.enabled = TRUE) | |
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
shell: Rscript {0} | |
- name: Webpage deployment | |
if: success() && contains('refs/heads/main', github.ref) | |
run: | | |
git config --local user.name "$GITHUB_ACTOR" | |
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
Rscript -e 'remotes::install_local()' | |
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' | |
- name: Code Coverage | |
if: success() && contains('refs/heads/main', github.ref) | |
run: covr::codecov(type=c("tests", "examples")) | |
shell: Rscript {0} |