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Full Package List
Kevin Mader edited this page Dec 10, 2018
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Here is the output from the conda list -n qbi2018 at the time the course was taught. While not all of these packages are absolutely necessary to run every lecture, many are dependencies of other packages.
# packages in environment at /Users/kevinmader/miniconda3/envs/qbi2018:
#
# Name Version Build Channel
absl-py 0.1.10 py_0 conda-forge
appmode 0.3.0 <pip>
appnope 0.1.0 py36_0 conda-forge
asn1crypto 0.24.0 py36_0 conda-forge
astor 0.6.2 py_0 conda-forge
autopep8 1.3.5 <pip>
awscli 1.15.57 <pip>
backcall 0.1.0 py_0 conda-forge
beautifulsoup4 4.6.3 <pip>
blas 1.1 openblas conda-forge
bleach 1.5.0 py36_0 conda-forge
bokeh 0.12.16 py36_0 conda-forge
botocore 1.10.56 <pip>
bs4 0.0.1 <pip>
ca-certificates 2018.4.16 0 conda-forge
certifi 2018.4.16 py36_0 conda-forge
cffi 1.11.5 py36_0 conda-forge
chardet 3.0.4 py36_0 conda-forge
clangdev 6.0.0 default_0 conda-forge
click 6.7 <pip>
cloudpickle 0.5.3 <pip>
colorama 0.3.9 <pip>
cryptography 2.2.1 py36_0 conda-forge
cycler 0.10.0 py36_0 conda-forge
dask-core 0.17.5 py_0 conda-forge
dask-ndfilters 0.1.2 <pip>
dask-ndmeasure 0.1.1 <pip>
dask-ndmorph 0.1.1 <pip>
deap 1.2.2 <pip>
decorator 4.3.0 py_0 conda-forge
distributed 1.21.8 <pip>
docutils 0.14 <pip>
entrypoints 0.2.3 py36_1 conda-forge
ffmpeg 2.8.6 0 menpo
freetype 2.8.1 0 conda-forge
gast 0.2.0 py_0 conda-forge
graphviz 2.38.0 7 conda-forge
grpcio 1.11.0 py36hd9629dc_0
h5py 2.7.1 py36_1 conda-forge
hdf5 1.8.18 3 conda-forge
HeapDict 1.0.0 <pip>
html5lib 0.9999999 py36_0 conda-forge
icu 58.2 0 conda-forge
idna 2.6 py36_1 conda-forge
imageio 2.3.0 py36_0 conda-forge
ipykernel 4.8.2 py36_0 conda-forge
ipython 6.4.0 py36_0 conda-forge
ipython_genutils 0.2.0 py36_0 conda-forge
ipyvolume 0.4.5 py36_0 conda-forge
ipywebrtc 0.3.0 py36_0 conda-forge
ipywidgets 7.2.1 py36_1 conda-forge
itk 4.13.0 py36_0 conda-forge
itkwidgets 0.9.0 <pip>
jedi 0.12.0 py36_0 conda-forge
jinja2 2.10 py36_0 conda-forge
jmespath 0.9.3 <pip>
jpeg 9b 2 conda-forge
jsonschema 2.6.0 py36_1 conda-forge
jupyter_client 5.2.3 py36_0 conda-forge
jupyter_contrib_core 0.3.3 py36_1 conda-forge
jupyter_contrib_nbextensions 0.5.0 py36_0 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
jupyter_highlight_selected_word 0.2.0 py36_0 conda-forge
jupyter_latex_envs 1.4.4 py36_0 conda-forge
jupyter_nbextensions_configurator 0.4.0 py36_0 conda-forge
kaggle 1.3.8 <pip>
Keras 2.1.3 <pip>
keras-contrib 2.0.8 <pip>
kiwisolver 1.0.1 py36_1 conda-forge
libcxx 6.0.0 0 conda-forge
libffi 3.2.1 3 conda-forge
libgfortran 3.0.0 0 conda-forge
libiconv 1.15 0 conda-forge
libpng 1.6.34 0 conda-forge
libprotobuf 3.5.2 0 conda-forge
libsodium 1.0.16 0 conda-forge
libtiff 4.0.9 0 conda-forge
libxml2 2.9.8 0 conda-forge
libxslt 1.1.32 0 conda-forge
lime 0.1.1.29 <pip>
llvm-meta 6.0.0 0 conda-forge
llvmdev 6.0.0 default_2 conda-forge
lxml 4.2.1 py36_0 conda-forge
markdown 2.6.11 py_0 conda-forge
markupsafe 1.0 py36_0 conda-forge
matplotlib 2.2.2 py36_1 conda-forge
mistune 0.8.3 py36_1 conda-forge
msgpack 0.5.6 <pip>
nbconvert 5.3.1 py_1 conda-forge
nbformat 4.4.0 py36_0 conda-forge
ncurses 5.9 10 conda-forge
networkx 2.1 py36_0 conda-forge
notebook 5.5.0 py36_0 conda-forge
numpy 1.14.3 py36_blas_openblas_200 [blas_openblas] conda-forge
olefile 0.45.1 py36_0 conda-forge
openblas 0.2.20 8 conda-forge
opencv3 3.2.0 py36_0 pluraldatum
openssl 1.0.2o 0 conda-forge
packaging 17.1 py_0 conda-forge
pandas 0.23.0 py36_1 conda-forge
pandoc 2.2.1 hde52d81_0 conda-forge
pandocfilters 1.4.2 py36_0 conda-forge
parso 0.2.1 py_0 conda-forge
pexpect 4.5.0 py36_0 conda-forge
pickleshare 0.7.4 py36_0 conda-forge
pillow 5.1.0 py36_0 conda-forge
pip 9.0.3 py36_0 conda-forge
plotly 3.1.1 <pip>
prompt_toolkit 1.0.15 py36_0 conda-forge
protobuf 3.5.2 py36_0 conda-forge
psutil 5.4.5 <pip>
ptyprocess 0.5.2 py36_0 conda-forge
pyasn1 0.4.3 <pip>
pycodestyle 2.4.0 <pip>
pycparser 2.18 py36_0 conda-forge
pydot 1.2.4 py_0 conda-forge
pygments 2.2.0 py36_0 conda-forge
pyopenssl 18.0.0 py36_0 conda-forge
pyparsing 2.2.0 py36_0 conda-forge
pysocks 1.6.8 py36_1 conda-forge
python 3.6.5 1 conda-forge
python-dateutil 2.7.3 py_0 conda-forge
python-graphviz 0.8.3 py36_0 conda-forge
pytorch 0.2.0 py36_4cu75 soumith
pytz 2018.4 py_0 conda-forge
pywavelets 0.5.2 py36_1 conda-forge
pyyaml 3.12 py36_1 conda-forge
pyzmq 17.0.0 py36_4 conda-forge
readline 7.0 0 conda-forge
requests 2.18.4 py36_1 conda-forge
retrying 1.3.3 <pip>
rise 5.3.0 py36_0 damianavila82
rsa 3.4.2 <pip>
s3transfer 0.1.13 <pip>
scikit-image 0.13.1 py36_0 conda-forge
scikit-learn 0.19.1 py36_blas_openblas_201 [blas_openblas] conda-forge
scipy 1.1.0 py36_blas_openblas_200 [blas_openblas] conda-forge
seaborn 0.7.1 <pip>
send2trash 1.5.0 py_0 conda-forge
setuptools 39.2.0 py36_0 conda-forge
simplegeneric 0.8.1 py36_0 conda-forge
simpleitk 1.1.0 py36h0a44026_0 simpleitk
six 1.11.0 py36_1 conda-forge
sortedcontainers 2.0.2 <pip>
sqlite 3.20.1 2 conda-forge
stopit 1.1.2 <pip>
tbb 4.3_20141023 0 menpo
tblib 1.3.2 <pip>
tensorboard 1.8.0 py36_1 conda-forge
tensorflow 1.8.0 py36_1 conda-forge
termcolor 1.1.0 py36_1 conda-forge
terminado 0.8.1 py36_0 conda-forge
testpath 0.3.1 py36_0 conda-forge
tk 8.6.7 0 conda-forge
toolz 0.9.0 py_0 conda-forge
torchvision 0.1.9 py36_1 soumith
tornado 5.0.2 py36_0 conda-forge
TPOT 0.9.0 <pip>
tqdm 4.23.4 <pip>
traitlets 4.3.2 py36_0 conda-forge
traittypes 0.2.0 py36_0 conda-forge
update-checker 0.16 <pip>
urllib3 1.22 py36_0 conda-forge
wcwidth 0.1.7 py36_0 conda-forge
webcolors 1.8.1 <pip>
webencodings 0.5.1 py36_0 conda-forge
werkzeug 0.14.1 py_0 conda-forge
wheel 0.31.0 py36_0 conda-forge
widgetsnbextension 3.2.1 py36_0 conda-forge
xz 5.2.3 0 conda-forge
yaml 0.1.7 0 conda-forge
zeromq 4.2.5 1 conda-forge
zict 0.1.3 <pip>
zlib 1.2.11 h470a237_2 conda-forge
zstandard 0.9.0 <pip>