# try to fix

kullrich · Nov 7, 2024 · 8002386 · 8002386
1 parent 156832b
commit 8002386
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -4,7 +4,7 @@ before_script:
   - apt-get update
   - apt-get -y install pandoc libcurl4-openssl-dev r-cran-devtools r-cran-testthat r-cran-curl
   - R -e "install.packages('BiocManager'); BiocManager::install(version = '3.20')"
-  - R -e "dir(); getwd(); sessionInfo(); install.packages('devtools'); install.packages('pkgdown'); BiocManager::install('Biostrings'); devtools::install()"
+  - R -e "dir(); getwd(); sessionInfo(); install.packages('devtools'); install.packages('pkgdown'); BiocManager::install('MSA2dist'); devtools::install()"
   - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1595.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1595/')); system('make')"
   - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')"
   - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip dagchainer.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/dagchainer/')); system('make')"