# gitlab.ci

kullrich · Mar 28, 2024 · a207607 · a207607
1 parent f2f3e40
commit a207607
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -2,7 +2,7 @@ image: rocker/r-devel:latest
 
 before_script:
  - apt-get update
- - apt-get -y install libcurl4-openssl-dev libssl-dev libxml2-dev libglu1-mesa-dev libssh2-1-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libgit2-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings
+ - apt-get -y install pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings
  - R -e "dir(); getwd(); sessionInfo(); install.packages('pkgdown'); devtools::install()"
  - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1542.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1542/')); system('make')"
  - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')"