Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 146 followers
- Stanford University
- https://kundajelab.stanford.edu
Popular repositories Loading
-
atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
-
chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Repositories
Showing 10 of 169 repositories
- scATAC-reprog Public
Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" by Nair, Ameen et al.
kundajelab/scATAC-reprog’s past year of commit activity - variant-scorer Public
A framework to score and analyze variant effects genome-wide using ChromBPNet models
kundajelab/variant-scorer’s past year of commit activity - chrombpnet Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
kundajelab/chrombpnet’s past year of commit activity - affinity_distillation Public
kundajelab/affinity_distillation’s past year of commit activity