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ajitjohnson committed Apr 3, 2022
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[![Gitter chat](https://badges.gitter.im/scimap_io/community.png)](https://gitter.im/scimap_io/community)
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<img src="./assets/scimap_logo.jpg" style="max-width:700px;width:100%" >

<img src="./assets/scimap_logo.jpg" style="" >
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Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spatial datasets mapped to XY coordinates. The package uses the [anndata](https://anndata.readthedocs.io/en/stable/anndata.AnnData.html) framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. The Python-based implementation efficiently deals with large datasets of millions of cells.
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#### Notice for Apple M1 users
Please note that multiple python packages have not yet extended support for M1 users.
Please note that multiple python packages have not yet extended support for M1 users.
Below is a solution to install scimap in `Apple M1` machines

```
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# install scimap
pip install -U scimap
# uninstall
# uninstall
conda remove llvmlite -y
pip uninstall numba -y
pip uninstall numpy -y
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### Funding
This work is supported by the following NIH grant K99-CA256497

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