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@lbcb-sci

Šikić lab

A computational group with a focus on the development of new algorithms and AI models for the analysis of DNA and RNA sequencing data and biomolecular strucures

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  1. raven raven Public

    De novo genome assembler for long uncorrected reads

    C++ 199 21

  2. racon racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    C++ 195 34

  3. herro herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    Rust 152 9

  4. graphmap2 graphmap2 Public

    Forked from isovic/graphmap

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

    C++ 65 5

  5. RiNALMo RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    Python 48 6

  6. ra ra Public

    Forked from rvaser/ra

    Assembler for raw de novo genome assembly of long uncorrected reads.

    Python 38 4

Repositories

Showing 10 of 23 repositories
  • herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    lbcb-sci/herro’s past year of commit activity
    Rust 152 9 23 4 Updated Jul 9, 2024
  • GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    lbcb-sci/GNNome’s past year of commit activity
    Python 22 BSD-3-Clause 5 0 0 Updated Jun 13, 2024
  • rockfish Public
    lbcb-sci/rockfish’s past year of commit activity
    Python 9 MIT 2 4 0 Updated Jun 2, 2024
  • I002C Public

    Telomere-to-Telomere diploid Indian Genome

    lbcb-sci/I002C’s past year of commit activity
    6 0 0 0 Updated May 9, 2024
  • RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    lbcb-sci/RiNALMo’s past year of commit activity
    Python 48 Apache-2.0 6 1 0 Updated Apr 30, 2024
  • racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    lbcb-sci/racon’s past year of commit activity
    C++ 195 MIT 34 22 4 Updated Dec 29, 2023
  • raven Public

    De novo genome assembler for long uncorrected reads

    lbcb-sci/raven’s past year of commit activity
    C++ 199 MIT 21 27 2 Updated Nov 15, 2023
  • roko Public

    A deep learning consensus polisher

    lbcb-sci/roko’s past year of commit activity
    Python 5 GPL-3.0 2 0 3 Updated Oct 3, 2023
  • heron-raven Public Forked from tihomirkonosic/heron-raven

    Development of Raven - Heron branch

    lbcb-sci/heron-raven’s past year of commit activity
    C++ 0 MIT 22 0 0 Updated Jun 12, 2023
  • T2T-assemblies Public

    T2T assemblies of human and durian genomes

    lbcb-sci/T2T-assemblies’s past year of commit activity
    0 1 0 0 Updated May 4, 2023
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