Merge branch 'master' of https://github.com/libKriging/rlibkriging #294
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| name: devtools-install_github | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 2 * * SAT' | |
| # To automatically cancel previous jobs in same branch or PR | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| install_github: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest, macOS-latest ] | |
| R: [ '4.3' ] | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| steps: | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.R }} | |
| rtools-version: '43' | |
| - name: Install tools for Linux | |
| run: sudo apt install -y cmake gfortran libcurl4-openssl-dev | |
| shell: bash | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Install tools for macOS | |
| run: brew install cmake gfortran | |
| shell: bash | |
| if: matrix.os == 'macOS-latest' | |
| # Should be temporary since it was ok without additional system packages one month ago | |
| - name: Install additional packages to compile devtools | |
| shell: bash | |
| run: sudo apt install -y libharfbuzz-dev libfribidi-dev | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Setup cmake | |
| uses: jwlawson/actions-setup-cmake@v1.13 | |
| with: | |
| cmake-version: '3.24.x' | |
| - name: Install devtools | |
| shell: bash | |
| run: | | |
| # Add --insecure to workaround missing certificates on Windows | |
| # --header is not required by an useful example if the repo becomes private | |
| curl --insecure --header 'authorization: Bearer ${{ secrets.GITHUB_TOKEN }}' -LO https://raw.githubusercontent.com/libKriging/rlibkriging/${{ env.BRANCH_NAME }}/tools/install_packages.R | |
| Rscript --no-save ./install_packages.R devtools | |
| - name: BioConductor install Rhdf5lib (Bioconductor deps not suported by devtools::install_github) | |
| shell: bash | |
| run: | | |
| export PATH=$PATH:/opt/R-devel/bin/:/opt/R-patched/bin/:/opt/R/bin | |
| Rscript -e "install.packages('BiocManager',repos='https://cloud.r-project.org'); BiocManager::install('Rhdf5lib'); remove.packages('BiocManager')" | |
| - name: install_github from ${{ env.BRANCH_NAME }} | |
| shell: bash | |
| run: Rscript -e "library(devtools); install_github('libKriging/rlibkriging', ref='${{ env.BRANCH_NAME }}'); if (!library('rlibkriging', character.only=TRUE, logical.return=TRUE)) quit(status=1, save='no')" |