Merge pull request #182 from lincc-frameworks/ppt-2.0.5

copier update PPT 2.0.5

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: v2.0.3
+_commit: v2.0.5
 _src_path: gh:lincc-frameworks/python-project-template
 author_email: brantd@uw.edu
 author_name: LINCC Frameworks
@@ -22,3 +22,4 @@ python_versions:
 - '3.10'
 - '3.11'
 - '3.12'
+- '3.13'

.github/ISSUE_TEMPLATE/README.md

@@ -0,0 +1,9 @@
+# Configurations
+
+Templates for various different issue types are defined in this directory
+and a pull request template is defined as ``../pull_request_template.md``. Adding,
+removing, and modifying these templates to suit the needs of your project is encouraged.
+
+For more information about these templates, look here: https://lincc-ppt.readthedocs.io/en/latest/practices/issue_pr_templating.html
+
+Or if you still have questions contact us: https://lincc-ppt.readthedocs.io/en/latest/source/contact.html

.github/workflows/README.md

@@ -0,0 +1,9 @@
+# Workflows
+
+The .yml files in this directory are used to define the various continuous
+integration scripts that will be run on your behalf e.g. nightly as a smoke check,
+or when you create a new PR.
+
+For more information about CI and workflows, look here: https://lincc-ppt.readthedocs.io/en/latest/practices/ci.html
+
+Or if you still have questions contact us: https://lincc-ppt.readthedocs.io/en/latest/source/contact.html

.github/workflows/asv-main.yml

@@ -8,7 +8,7 @@ on:
     branches: [ main ]
 
 env:
-  PYTHON_VERSION: "3.10"
+  PYTHON_VERSION: "3.11"
   ASV_VERSION: "0.6.4"
   WORKING_DIR: ${{github.workspace}}/benchmarks
 

.github/workflows/asv-nightly.yml

@@ -9,7 +9,7 @@ on:
   workflow_dispatch:
 
 env:
-  PYTHON_VERSION: "3.10"
+  PYTHON_VERSION: "3.11"
   ASV_VERSION: "0.6.4"
   WORKING_DIR: ${{github.workspace}}/benchmarks
   NIGHTLY_HASH_FILE: nightly-hash

.github/workflows/asv-pr.yml

@@ -15,7 +15,7 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  PYTHON_VERSION: "3.10"
+  PYTHON_VERSION: "3.11"
   ASV_VERSION: "0.6.4"
   WORKING_DIR: ${{github.workspace}}/benchmarks
   ARTIFACTS_DIR: ${{github.workspace}}/artifacts

.github/workflows/build-documentation.yml

@@ -21,10 +21,10 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - name: Set up Python 3.10
+    - name: Set up Python 3.11
       uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.11'
     - name: Install dependencies
       run: |
         sudo apt-get update

.github/workflows/pre-commit-ci.yml

@@ -20,7 +20,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.11'
     - name: Install dependencies
       run: |
         sudo apt-get update
@@ -32,5 +32,5 @@ jobs:
         extra_args: --all-files --verbose
       env:
         SKIP: "check-lincc-frameworks-template-version,no-commit-to-branch,check-added-large-files,validate-pyproject,sphinx-build,pytest-check"
-    - uses: pre-commit-ci/lite-action@v1.0.3
+    - uses: pre-commit-ci/lite-action@v1.1.0
       if: failure() && github.event_name == 'pull_request' && github.event.pull_request.draft == false

.github/workflows/publish-benchmarks-pr.yml

@@ -27,7 +27,7 @@ jobs:
         echo "Conclusion: ${{ github.event.workflow_run.conclusion }}"
         echo "Event: ${{ github.event.workflow_run.event }}"
     - name: Download artifact
-      uses: dawidd6/action-download-artifact@v6
+      uses: dawidd6/action-download-artifact@v7
       with:
         name: benchmark-artifacts
         run_id: ${{ github.event.workflow_run.id }}

.github/workflows/publish-to-pypi.yml

@@ -27,7 +27,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.11'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

.github/workflows/smoke-test.yml

@@ -20,7 +20,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v4

.github/workflows/testing-and-coverage.yml

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - uses: actions/checkout@v4
@@ -33,6 +33,6 @@ jobs:
       run: |
         python -m pytest --cov=nested_pandas --cov-report=xml
     - name: Upload coverage report to codecov
-      uses: codecov/codecov-action@v4
+      uses: codecov/codecov-action@v5
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -18,7 +18,7 @@ repos:
         description: Clear output from Jupyter notebooks.
         files: \.ipynb$
         exclude: ^docs/pre_executed
-        stages: [commit]
+        stages: [pre-commit]
         language: system
         entry: jupyter nbconvert --clear-output
     # Prevents committing directly branches named 'main' and 'master'.

.readthedocs.yml

@@ -9,7 +9,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.10"
+    python: "3.11"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

benchmarks/asv.conf.json

@@ -37,7 +37,7 @@
     // The Pythons you'd like to test against. If not provided, defaults
     // to the current version of Python used to run `asv`.
     "pythons": [
-        "3.10"
+        "3.11"
     ],
     // The matrix of dependencies to test. Each key is the name of a
     // package (in PyPI) and the values are version numbers.  An empty

docs/index.rst

@@ -19,10 +19,15 @@ is used internally to aid in scalability and performance.
   :align: center
   :alt: Example NestedFrame
 
+<<<<<<< before updating
 Nested-Pandas is motivated by time-domain astronomy use cases, where we see
 typically two levels of information, information about astronomical objects and
 then an associated set of `N` measurements of those objects. Nested-Pandas offers
 a performant and memory-efficient package for working with these types of datasets. 
+=======
+   >> conda create env -n <env_name> python=3.11
+   >> conda activate <env_name>
+>>>>>>> after updating
 
 Core advantages being: