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linkml · Jan 29, 2022 · bf1e265 · bf1e265
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diff --git a/docs/index.md b/docs/index.md
@@ -3,10 +3,9 @@
 Validation and inference over LinkML instance data using souffle
 
 
+![souffle logo](https://souffle-lang.github.io/img/logo-2x.png)
+![linkml logo](https://avatars.githubusercontent.com/u/79337873?s=200&v=4)
 
+## Caveats
 
-
-## Background
-
-See [#196](https://github.com/linkml/linkml/discussions/196)
-
+This is currently experimental/alpha software!
diff --git a/docs/motivation.md b/docs/motivation.md
@@ -9,12 +9,12 @@ In fact the core linkml library already has wrappers for these. See [working wit
 
 However, jsonschema in particular offers very limited expressivity. There are many more opportunities for expressivity with linkml.
 
-In particular, LinkML 1.2 introduces autoclassification rules, conditional logic, and complex expressions -- THESE ARE NOT TRANSLATED YET, but they will be in future.
+In particular, LinkML 1.2 introduces autoclassification rules, conditional logic, and complex expressions -- **THESE ARE NOT TRANSLATED YET**, but they will be in future.
 
 For now there are three ways to get expressive logical rules in:
 
  1. Using existing metamodel logical slots
- 2. Using dedicated *annotations* -- these may become bona fide metamodel slots in the futur
+ 2. Using dedicated *annotations* -- these may become bona fide metamodel slots in the future
  3. including rules in the header of your schema
 
 ## Use Cases
@@ -38,3 +38,12 @@ See more:
 ### Annotation QC
 
 Many annotation systems have QC rules TODO
+
+### Templated ontology generation
+
+See [linkml-owl](https://linkml.io/linkml-owl)
+
+When generating OWL ontologies from data we often want to perform
+inference over the input data, to check for consistency, and
+conformance to rules about structure. This is typically different from
+the axioms we use over the compiled OWL ontology.
diff --git a/docs/schema-rules.md b/docs/schema-rules.md
@@ -4,8 +4,11 @@ For now, you can also include your own rules in the header of your schema as an
 
 E.g. see tests/inputs/personinfo.yaml, which has this as a schema-level annotation:
 
-```prolog
+```yaml
+id: https://w3id.org/linkml/examples/personinfo
 
+annotations:
+  datalog: |-
     grandparent_of(i, j) :-
         parent_of(i, z),
         parent_of(z, j).

diff --git a/docs/translations.md b/docs/translations.md
@@ -59,7 +59,6 @@ Slots can be declared as [inverses](https://w3id.org/linkml/inverse):
 
 ```yaml
 sibling_of:
-    is_a: person_to_person_related_to
     inverse: sibling_of
 ```
 
@@ -157,7 +156,6 @@ Example:
 
 ```yaml
   ancestor_of:
-    is_a: person_to_person_related_to
     annotations:
       transitive_closure_of: parent_of
 ```

diff --git a/mkdocs.yml b/mkdocs.yml
@@ -3,6 +3,11 @@ theme:
   name: material
   analytics:
     gtag: G-2SYBSJVZ23
+  palette:
+    scheme: slate
+    primary: cyan
+plugins:
+  - search
 nav:
   - Introduction: index.md
   - Installation: install.md