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bumped version #41

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Feb 27, 2024
Merged

bumped version #41

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4269a96
bumped version
cmungall Feb 9, 2024
a6f2a5e
bump version
cmungall Feb 27, 2024
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3 changes: 1 addition & 2 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,7 @@ RUN = poetry run
all: docs/examples.md test

test:
$(RUN) python -m unittest discover
# $(RUN) pytest
$(RUN) pytest tests

tests/model/%.py: tests/model/%.yaml
$(RUN) gen-python $< > $@.tmp && mv $@.tmp $@
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1,752 changes: 887 additions & 865 deletions poetry.lock
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6 changes: 3 additions & 3 deletions pyproject.toml
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Expand Up @@ -34,13 +34,13 @@ style = "pep440"
linkml-data2owl = "linkml_owl.dumpers.owl_dumper:cli"

[tool.poetry.dependencies]
python = "^3.8"
python = "^3.8.1"

click = "*"
funowl = ">=0.2.3"
Jinja2 = ">=3.0.3"
linkml = ">=1.3.0"
linkml-runtime = ">=1.3.4"
linkml = ">=1.7.4"
linkml-runtime = ">=1.7.0"

[tool.poetry.dev-dependencies]
tox = ">=3.24.5"
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7 changes: 7 additions & 0 deletions tests/inputs/expected_ro.ofn
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Expand Up @@ -29,6 +29,7 @@ Ontology( <http://purl.obolibrary.org/obo/ro/ro-metamodel.yaml>
SubObjectPropertyOf( <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0002131> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/BFO_0000051> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/BFO_0000051> "has part" )
AnnotationAssertion( dcterms:conformsTo BFO:0000051 rometa:ObjectProperty )
InverseObjectProperties( <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000051> )
TransitiveObjectProperty( <http://purl.obolibrary.org/obo/BFO_0000050> )
SubObjectPropertyOf( ObjectPropertyChain(
Expand Down Expand Up @@ -59,6 +60,7 @@ Ontology( <http://purl.obolibrary.org/obo/ro/ro-metamodel.yaml>
ObjectPropertyRange( <http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/BFO_0000004> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_0002203> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_0002203> "develops into" )
AnnotationAssertion( dcterms:conformsTo RO:0002203 rometa:ObjectProperty )
InverseObjectProperties( <http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/RO_0002203> )
TransitiveObjectProperty( <http://purl.obolibrary.org/obo/RO_0002202> )
AnnotationAssertion( IAO:0000115 RO:9999998 "Inverse of RO:0002012 occurrent part of" )
Expand All @@ -70,6 +72,7 @@ Ontology( <http://purl.obolibrary.org/obo/ro/ro-metamodel.yaml>
ObjectPropertyRange( <http://purl.obolibrary.org/obo/RO_0002012> <http://purl.obolibrary.org/obo/BFO_0000003> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_9999998> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_9999998> "has occurrent part" )
AnnotationAssertion( dcterms:conformsTo RO:9999998 rometa:ObjectProperty )
InverseObjectProperties( <http://purl.obolibrary.org/obo/RO_0002012> <http://purl.obolibrary.org/obo/RO_9999998> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_0002104> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_0002104> "has plasma membrane part" )
Expand All @@ -93,10 +96,12 @@ Ontology( <http://purl.obolibrary.org/obo/ro/ro-metamodel.yaml>
SubObjectPropertyOf( <http://purl.obolibrary.org/obo/RO_0002447> <http://purl.obolibrary.org/obo/RO_0002436> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_9999999> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_9999999> "phosphorylated by" )
AnnotationAssertion( dcterms:conformsTo RO:9999999 rometa:ObjectProperty )
InverseObjectProperties( <http://purl.obolibrary.org/obo/RO_0002447> <http://purl.obolibrary.org/obo/RO_9999999> )
SubClassOf( GO:0016301 ObjectHasSelf( RO:0002481 ) )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_0002481> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_0002481> "is kinase activity" )
AnnotationAssertion( dcterms:conformsTo RO:0002481 rometa:RolifiedObjectProperty )
AnnotationAssertion( IAO:0000115 RO:0018003 "Inverse of RO:0018002 myristoylates" )
SubObjectPropertyOf( RO:0018001 RO:0002564 )
AnnotationAssertion( IAO:0000115 RO:0018001 "Helper relation for OWL definition of RO:0018002 myristoylates" )
Expand All @@ -112,8 +117,10 @@ Ontology( <http://purl.obolibrary.org/obo/ro/ro-metamodel.yaml>
SubObjectPropertyOf( <http://purl.obolibrary.org/obo/RO_0018002> <http://purl.obolibrary.org/obo/RO_0002436> )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_0018003> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_0018003> "myristoylated by" )
AnnotationAssertion( dcterms:conformsTo RO:0018003 rometa:ObjectProperty )
InverseObjectProperties( <http://purl.obolibrary.org/obo/RO_0018002> <http://purl.obolibrary.org/obo/RO_0018003> )
SubClassOf( GO:0019107 ObjectHasSelf( RO:0018001 ) )
Declaration( ObjectProperty( <http://purl.obolibrary.org/obo/RO_0018001> ) )
AnnotationAssertion( rdfs:label <http://purl.obolibrary.org/obo/RO_0018001> "is myristoyltransferase activity" )
AnnotationAssertion( dcterms:conformsTo RO:0018001 rometa:RolifiedObjectProperty )
)
2 changes: 1 addition & 1 deletion tests/inputs/monsters_and_magic.yaml
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Expand Up @@ -404,7 +404,7 @@ slots:
owl: AnnotationProperty

type:
designates_type: true
#designates_type: true
#range: Grouping
description: >-
The type of a thing
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