Release V6.1

• Flowsom switch from python to R
• Update and fixing coding part

Release V6.0

1. Import and export FCS files
2. Python3 version 10
3. Fix some bugs

Release V5.2

• Set number of events

Release V5.1

• Quality control with FlowAI tool
• Channel Parsing
• Minor bug fixing
• Introducing PyVIA instead of PARC

Full Changelog: 5.0...5.1

Release V5.0

• Export of cluster columns in concatenated files fixed
• Introducing runtime flag with the following choices (flag -r ):
  1. Full mode, Clustering and UMAP generation output
  2. Clustering, only clustering steps are computed
  3. UMAP, only umap coordinates are computed
• Intoducing Scanorama package for batch correction (flag -b )and possibility to choice which column of Infofile to use for batch correction (flag -e )
• Introducing the possibility to modify UMAP min distance and spread
• UMAP generation for all column on infofile

Release V4.0

What's Changed

• Update README.md by @sinnamone in #5

New Contributors

• @sinnamone made their first contribution in #5

Full Changelog: 2.2...4.0

2.2

Major release:

1. Create function "runflowsom" that will allow users to perform clustering with flowsom python package https://github.com/Hatchin/FlowSOM
2. Remove "both" parameter, deprecated.
3. Remove "pdf" plot
4. Anndata.X now is scaled, improve visualization in Cellxgene

Minor release:

1. Fix bug on if at line 106 of file PhenoFunctions_v2_0.py
2. Change min_dist parameter on line 222 from 0.001 to 0.01
3. Upload new testing dataset

Cytophenograph Release 1.0

Update

Cytophenograph Release 2.0

Additions:

Export of analysis in h5ad, ready to use with cellxgene
Use of anndata object instead of only pandas dataframe
Add info_file with metadata information as new input
Remove warning when export in eps